Capnocytophaga sp. FDAARGOS_737: FOC45_01775
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Entry
FOC45_01775 CDS
T06329
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
capf
Capnocytophaga sp. FDAARGOS_737
Pathway
capf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOC45_01775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capf03019
]
FOC45_01775
03009 Ribosome biogenesis [BR:
capf03009
]
FOC45_01775
Enzymes [BR:
capf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOC45_01775
Messenger RNA biogenesis [BR:
capf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOC45_01775
Ribosome biogenesis [BR:
capf03009
]
Prokaryotic type
rRNA helicases
FOC45_01775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ParBc
RecG_N
CoA_binding_2
Motif
Other DBs
NCBI-ProteinID:
QGS17055
UniProt:
A0A6B8TAP7
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All DBs
Position
399698..401446
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AA seq
582 aa
AA seq
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MNLFEQLGLDEPILRAITDMGFETPSEIQQKAIPTLLEDDTDMVALAQTGTGKTAAFGFP
LLQLIDTDSKLTQGLILSPTRELCLQIASELKNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTPKEKST
WLFSATMPNEVARIARQFMRKPIEITVGTRNQASSTVQHEYYVVNGRHRYQALKRLADAN
PDIFSVVFCRTKKDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVLVPKSELRKIKEIEKI
IKQPFEQKALPTGIEICEIQLYHLANSLKNVEVNPAIEDYLPAIYKELQHIDREELIKKI
FAVEFTRFFNYYKNAEVLPEEDAKESRKGGDSGEVRYFINIGERDGYDWKTLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTEADQADLVMSTFADFRMDGRFINVEISDKGAGRSRGDKK
GGESRRKGEDKKKGEKKGEKKSRKQKTVEAFEQAFKKKKKRK
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttgatgaacctatcctcagagccataactgatatg
ggctttgaaactccttctgaaatccaacaaaaagccattcctaccctcttagaagatgat
accgatatggtagctttagctcaaacaggtactggtaaaacagctgcctttggcttccct
cttctgcagcttatcgacactgatagcaagcttacacaagggcttatcctttcgcctacg
cgcgaactttgtttgcaaattgcttcagaattgaaaaattacgctaaatatttgcctaag
gtgaatgtggtagcggtatacggtggtgcgagtatagaagaacaagcgcgtagcctgaaa
aaaggggcgcaaataatagtggctactccagggcgtatgcaggatatgatacgccgcaat
tttgtggatattagccatattaactactgtgtgttagacgaggctgatgagatgctcaat
atgggcttttatgaagatataaccgctattttgtcgcatacccctaaggagaaaagtacg
tggcttttttcggctacgatgcctaatgaggttgcgcggatagctcgtcagtttatgcgt
aaacctatcgagataactgtcggcacacgcaatcaggcgagtagcactgtgcagcacgag
tattacgtggtaaatgggcgacataggtatcaggcactcaaacgattagcagatgccaat
cctgatattttctcggtagttttctgtcgtactaagaaagatacgcaagccgtagctgaa
aagttgatagaagatggttataatgcggcagccttacacggcgatttgagtcagaatcaa
cgcgatttagtgatgaagtcctttagggcacgccaaatacagatgctagtggctactgat
gtggcagctcgcggtatagatgtagatgatattacccacgtgatacattaccagcttcct
gacgagatagagacttataaccaccgcagtgggcgtacgggtagagctggtaagtcgggt
atttcgatggttctcgtacctaaaagtgagcttaggaagataaaggagatagagaagatt
atcaaacaaccttttgagcagaaggctttgcctacgggcattgaaatatgcgaaatacag
ctataccatttggctaacagtctgaagaatgtagaggtcaatccggctatagaagattat
ttgcctgccatttacaaagaattgcaacacatagaccgcgaagagcttatcaaaaaaata
tttgcggtagagtttactcgcttctttaattattacaaaaatgctgaagttttgccagaa
gaagacgcaaaagagagcagaaaaggaggcgatagcggtgaggtgcgttacttcatcaat
ataggtgagcgcgatggttatgattggaagacgcttaaggactttctgaaggctacgctc
aacttaggaagagatgatgtcttcaaagtagatgtaaaaaatagcttctctttctttaat
accgaagcagaccaagcggacttagtgatgagtacctttgctgattttagaatggacggc
aggtttatcaatgtagagatttctgacaaaggagcagggcgttcacgaggcgataaaaaa
ggcggcgaaagtaggagaaaaggagaagataagaagaaaggtgaaaagaaaggcgagaag
aaaagtcgtaaacagaagactgtagaggcttttgaacaggctttcaagaaaaagaaaaaa
cgaaaataa
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