Capnocytophaga endodontalis: CBG49_04585
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Entry
CBG49_04585 CDS
T04940
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
capn
Capnocytophaga endodontalis
Pathway
capn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
capn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBG49_04585 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
capn03019
]
CBG49_04585 (rny)
Messenger RNA biogenesis [BR:
capn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBG49_04585 (rny)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Sigma_reg_N
KH_2
Motif
Other DBs
NCBI-ProteinID:
ASF42411
UniProt:
A0A1Z4BM92
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Position
960198..961766
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AA seq
522 aa
AA seq
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MDSTVIISIAVFIIALAIGFAIAKVLEKKNASKIILNAQNEADVLLKNAKVEGENIKKDK
IFQAKEKFLELKAEHEKTIAAKDKKMAEAEKRIRDKESQVSNELAQNKRLKDELEKKTEE
VDFRLQTLDKKQEEIERLHKSQVQQLEVISGLSAEEAKKQLTDSLRSEAQADAMAYIQNT
IEEAKLTAHQEARKIIINTIQRIGTEEAVDNCVSVFNLESDEVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVTDGRIHPARIEEVVEKTTKQIEEE
IVEIGKRTVIDLGIHGLHPELVKCVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNP
KLAKRAGLLHDIGKVPQVETETPHALLGMEWAEKYGEKPEVCNAIGAHHDEIEMTSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDAAFTFQGVKKAYAIQAGRELRVIVESEK
VTDDKAAELSFNLSQKIQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggatagtacagttattataagtattgcagtttttattatcgcccttgccatagggttt
gctatcgccaaagtgctggaaaagaagaacgcctctaaaattattctcaacgctcagaat
gaagccgacgttcttctaaaaaatgctaaagttgaaggcgaaaacattaaaaaagacaaa
atcttccaagctaaagaaaagttcctcgaactaaaagccgaacacgaaaaaacaatcgct
gccaaagataaaaaaatggcagaggctgaaaaacgtatccgtgataaagaatcacaagta
tccaatgaattagctcaaaacaaacgcctgaaagacgagttggaaaagaaaactgaagaa
gttgatttccgcctccaaactctcgacaaaaaacaagaagaaatcgaacgtttacacaaa
agccaagtgcaacaactcgaagttatctccggactctccgccgaagaagctaaaaaacaa
ctcaccgactctcttcgcagtgaggctcaagccgatgcaatggcatatatccaaaatacc
attgaggaagctaaactcaccgctcatcaagaagctcgaaaaatcatcattaataccata
caacgtataggcactgaggaagcagtagacaactgtgtatcagtattcaacctcgaatcc
gatgaagtgaaaggtcgcatcatcggtcgtgaaggtcgcaacatccgcgcccttgaagcc
gctaccggggtcgaaattattgtagatgatacccccgaagcgattatcctctcttgcttc
gattcagtacgccgcgaaattgcacgcctctcattgcacaaactcgtaaccgatggtcgt
atccaccctgcacgtattgaggaagtagttgaaaaaactaccaaacaaatagaagaagaa
atcgttgaaataggaaaacgcaccgtaatcgacctcggtatccacggattacaccccgaa
ttggtgaaatgtgtgggacgtatgaaataccgttcttcttatggtcaaaacctcttacaa
cactcacgcgaggtagccaaactttgcggggtaatggcagccgaattaggcttgaaccct
aaactcgccaaacgtgccggacttttgcacgacataggtaaagtgccacaagtggaaacc
gaaacccctcacgcgctcctcggtatggaatgggcagagaaatatggtgaaaaacccgaa
gtgtgcaacgctattggggctcaccacgacgaaatagaaatgacttcattgctttcacct
atcgtacaagtatgcgatgctatcagtggagcacgtccaggagcacgtcgccaagtactc
gattcgtacattcaacgtctcaaagacctcgaagatgcagccttcactttccaaggtgtg
aaaaaagcttatgctattcaagcgggtcgtgagttacgcgtaatcgtagaaagcgaaaaa
gtaaccgatgataaagccgcagaactatcattcaacttatcacaaaaaatccaaactgat
atgacctacccaggtcaagtgaaagtaacggtaatccgtgaaactcgtgctgtgaatatc
gcaaaatag
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