Chlamydia avium: M832_03970
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Entry
M832_03970 CDS
T03069
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cav
Chlamydia avium
Pathway
cav03030
DNA replication
cav03410
Base excision repair
cav03420
Nucleotide excision repair
cav03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M832_03970 (ligA)
03410 Base excision repair
M832_03970 (ligA)
03420 Nucleotide excision repair
M832_03970 (ligA)
03430 Mismatch repair
M832_03970 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cav03032
]
M832_03970 (ligA)
03400 DNA repair and recombination proteins [BR:
cav03400
]
M832_03970 (ligA)
Enzymes [BR:
cav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M832_03970 (ligA)
DNA replication proteins [BR:
cav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M832_03970 (ligA)
DNA repair and recombination proteins [BR:
cav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M832_03970 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M832_03970 (ligA)
MMR (mismatch excision repair)
DNA ligase
M832_03970 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M832_03970 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_3
5_3_exonuc
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AHK63262
UniProt:
W8K054
LinkDB
All DBs
Position
complement(427964..429985)
Genome browser
AA seq
673 aa
AA seq
DB search
MVFVVLKESNSCRMQDPYSEKQYLSLCQEIAQDDYLYYVLHQPRISDYDYDLKMQELLRI
EALHPEWLVPWSPSMRLGDRTSGIFPVVAHSQPMLSIANCYTREDLDDFFSRVEKTLRRI
PTYTLELKIDGIAVSLRYEQGILAQALSRGNGLEGEDITANIRTIRSLPLRLPEGCPEVV
EVRGEVFFSKATFEQMNANQRDTNKPVFANPRNAAGGTLKLLSSKDAAQRNLELSIYGVL
AGGTESHYENLLLCKTWGFPVLGRPKQCRTAQEVVHVLNEVEEIRNHLPMEIDGVVIKVD
SLKDQQILGMTAKHYRWALAYKYAPEQGETLLEDIFVQVGRTGVLTPVAKLRPIVLSGSK
ISRASLYNEEEIEKKDIRIGDTVYVEKGGEIIPKIVGVCLEKRPEGAQPWHMPEFCPVCN
SRVIRESDKVSVRCANPQCAAGAMEKICFFVGRGAMDIDHFGEKVVTKLFDLGVIQRCCD
IFQITEQDLLQLPGFKDKSVKNLLQSIQKAKVVPLDRFIVALGIPFVGIGVASSLAEHFL
SLDAIMDASLDELKSIDGIGEKVAHSILEYFSRSENIDDINKMISLGVHVIPYEKKLSSL
GKTFVITGTLETMTRSEIERTIRNHGGKVSSVISKNVDYIIVGDHPGSKLSKAQDLNIPV
LYEKDLFRLLKLK
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgttgtgctaaaggagtctaatagctgtagaatgcaggatccttattccgag
aaacagtatttgtctttgtgccaagaaatcgctcaagatgattacttatattatgtactt
catcagcccaggatttctgattatgattatgatctgaaaatgcaagaacttctccgtata
gaagctttgcatcctgagtggttagttccctggtcaccatctatgcgtcttggtgatcgt
acatcagggatatttcctgttgttgcacattctcaacctatgctttctatagccaattgc
tatacacgcgaagatcttgatgatttcttttctagagttgaaaaaactttaagaagaatt
cctacatacacattagaattgaagatcgatggtattgctgtgtctctccgttatgaacag
ggaatccttgctcaagctttaagtcgagggaatggacttgaaggagaagatattactgca
aatattcgtacaatacgttctttgcctttgcgccttcctgagggatgtcccgaagttgtt
gaagtgcgaggagaagtatttttctcaaaggcaacattcgagcagatgaatgctaatcag
agagatacaaacaaaccagtatttgctaatcctcgaaatgcagcaggtggcacattaaaa
cttttatcttctaaggatgccgctcaaagaaatcttgaactttctatttatggagtatta
gcaggaggaacagagtcccactatgaaaatcttttgttatgtaagacttgggggttccct
gtactagggagaccgaaacaatgccgaacagcgcaagaggttgttcatgtcctcaatgaa
gtggaagaaattcgtaatcatctccctatggaaattgatggagtggtgattaaagttgat
agtcttaaggatcaacaaattttggggatgacagctaagcattatcgttgggcattagca
tacaaatatgccccagaacaaggagaaacacttttagaagatatttttgttcaggtagga
agaacaggagtactgactcccgtagcgaaattacgtcccatagttttatccgggtcaaag
atttctcgtgcttccctatacaatgaagaagaaattgaaaaaaaggatattcgtattggc
gatacggtttacgtagaaaagggaggagaaatcattcctaaaattgttggtgtgtgtttg
gaaaagcgtccagaaggagcgcaaccctggcatatgcctgaattttgtcccgtttgtaat
agtcgggtgattcgcgaatccgataaagtttctgttcgttgtgctaatccacaatgtgca
gcaggagctatggaaaaaatctgcttttttgttggacgtggagccatggatattgatcac
tttggagagaaggtggtcacaaaattgtttgatttaggtgtgatccaacgttgctgtgat
attttccaaattacagagcaggatcttcttcaattaccaggatttaaggataaatcagta
aaaaatcttcttcagagtattcaaaaggctaaggttgttcctctagaccgttttattgtt
gccttgggaatcccctttgtggggattggtgtagcatcatctttggcagagcattttctt
agtctagatgccattatggatgcttcattggatgaactcaagtccattgacggtattggg
gaaaaggtagcacattcaattctagaatatttttctcgttctgaaaacattgacgatatt
aataagatgatatctttgggagttcatgtaatcccatacgagaaaaagctctcatcttta
gggaaaaccttcgtgattacggggactttagaaacaatgacacgatccgaaatcgagaga
acgattcgtaatcacggagggaaggtttcctcagtaatttctaaaaatgttgattatatc
attgtaggcgatcatcccggatccaagttatccaaggctcaggatttgaatatccccgtt
ctatatgagaaggatttgtttaggcttcttaagcttaaataa
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