Campylobacter avium: CAV_1117
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Entry
CAV_1117 CDS
T05533
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cavi
Campylobacter avium
Pathway
cavi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cavi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAV_1117 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cavi03021
]
CAV_1117 (rpoB)
03400 DNA repair and recombination proteins [BR:
cavi03400
]
CAV_1117 (rpoB)
Enzymes [BR:
cavi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAV_1117 (rpoB)
Transcription machinery [BR:
cavi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAV_1117 (rpoB)
DNA repair and recombination proteins [BR:
cavi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAV_1117 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASQ30750
UniProt:
A0A222MYF6
LinkDB
All DBs
Position
complement(1100206..1104336)
Genome browser
AA seq
1376 aa
AA seq
DB search
MQNKKHSKNRLRIDFSSTSKQIDIPNLLQLQQKSFDDFLNYENKSKESGIEKVFKSIFPI
HDPQNRLSLEYVNSEIGKPKYTVRECMERGLTYSVNLKMKIRLTLHEKDEKTGEKIGIKD
IKEQEIFIREIPLMTDRTSFIINGVERVVVNQLHRSPGVIFKEEESSTVANKLVYTAQII
PDRGSWLYLEYDVKDVLYVRINKRRKMPITMLFRALGYKKQDIIKLFYPVQTIHVKKNKF
LVEFNPSDFLERVEYDLKDEKGNLIVQAGKRLNKKKAENLVKEGLKYIEYPAEILSRRHL
ANPLIDESTGEVMFDSLTLLDDSKLAKIKEKYKSFDIANDLAAEVDDAIINSFLQDNETL
KALRQSENIDNENDLAAIRIYKVMRPGEPVLKEAAKNYVNDLFFNPERYDLTKVGRMKMN
HKLALNVPEYTTVLTNEDIIKTTKYLIKIKNGKGRIDDRDHLGNRRIRSIGELLANELHL
GLAKMQKAIRDKFTSLNADLEKVMPYDLINPKIITTTIMEFFTGGQLSQFMDQTNPLSEV
THKRRLSALGEGGLVKERAGLEVRDVHSTHYGRICPVETPEGQNIGLINTLATYSKVNDL
GFVEAPYRKVVNAKVSDEVVYLTATQEENLVIAAASTKLDSKGNIVEDFVEARKDGETIL
AKKDEVQLIDLCSGMIVGVTASLIPFLEHDDANRALMGSNMQRQAVPLLTCNAPIVGTGM
EQTIARDAWMAIKAKRGGVVEKVDNKSIFIMGEDDKGPFIDHYSMEKNLRTNQNTVYNQH
PIVKKGEKIEAGQIIADGASMDEGELAIGKNALIAFMPWNGYNYEDAIVVSEKMIREDAF
TSVHIYEKEIEARELKDGIEEITRDIPNIKEEDISHLDESGIARIGTHIKPGMILVGKVS
PKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDLRAIKA
HDEEKMALEKEHHDRLLMMDREEILRVCSLLSKSALQSEQKVGNKTYKKGAKIDIEVLKT
INRFALNSLVKAYSKEVQKQYEDWKNHFQNEKKRLKSEHDDKLDILEKDDILPSGVVKLV
KIYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGRSVDIALNPLGVPSRMNIG
QILESHLGLVGLRLGEQIQEIFDKKKKDFIKELRSKMLEICSLERFTKEKKFIESLSDEE
LVSYARDWSKGVKFATPVFEGTSIEEFEKLFEMAKVSMDGKSELYDGRTGEKIAERVHVG
CMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLR
EMLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLANELKSLALDVEIFDKDE
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacaaaaaacattcaaaaaatagattaagaattgatttctcaagcacttcaaaa
caaattgatattccaaatcttttacaacttcaacaaaagagctttgatgattttttaaat
tatgaaaataaaagcaaggaaagtggcatagaaaaggtatttaaatcaatttttcctata
cacgatccgcaaaatagattaagtttagaatatgtaaattcagaaattggtaagccaaaa
tacactgttagagaatgtatggaaagaggacttacttattctgtaaatttaaagatgaaa
attcgcttaaccttgcatgaaaaagatgaaaaaacaggtgaaaaaataggcataaaagat
ataaaagaacaagaaatttttataagagaaattcctctgatgactgatagaacctcattt
ataataaatggcgttgaaagggttgtggtaaatcagcttcacagaagcccgggcgtaatc
tttaaggaggaagaaagctcgactgtagcaaataaattagtatacacagctcaaatcata
ccagatagaggctcttggctgtatcttgaatatgatgttaaagatgttttgtatgttcgt
ataaataaaaggcgtaaaatgcctataactatgctttttagagcattaggttataaaaaa
caagatattataaagcttttttatccggttcaaactatacatgtaaagaaaaataaattt
ttggttgaatttaatcctagtgatttcttagaaagagttgaatatgatttaaaagacgaa
aaggggaatttgatagttcaagccggaaaaagattaaataaaaagaaggctgaaaattta
gtaaaagaggggttaaaatatatagagtatccggctgaaattctttctagaaggcatctt
gcaaatccgctcattgatgagagcaccggcgaagttatgtttgattctttaacgctttta
gatgatagtaagttggccaaaattaaagaaaagtacaaaagctttgatatagcaaatgac
ttggcagcggaagtagatgatgctattataaattcatttttacaagataatgaaacatta
aaggccttgagacaaagtgaaaatatagacaatgaaaacgatcttgccgcaattagaatt
tacaaggttatgagaccgggagagcctgtattaaaagaggcggcgaaaaactacgtgaat
gatttatttttcaacccagaaagatacgatttaacaaaggttggtcgtatgaagatgaac
cataagctagccttaaatgtacctgaatacaccacagttttaacaaacgaagatattata
aaaaccacaaaatatctaattaaaatcaaaaatggcaagggcaggatagatgatagagac
catttaggaaaccgccgtatccgctctattggcgagcttttggcaaacgagcttcatcta
gggcttgctaaaatgcaaaaggctataagagataaatttacctctcttaatgctgatttg
gaaaaggtcatgccttatgatttgattaatcctaagattatcacaaccactataatggaa
ttttttaccggcggacagctttcgcagtttatggatcagacaaatccacttagtgaggtt
acccacaaaagacgtctttcagcacttggcgagggcggacttgtgaaagaaagagcaggg
cttgaggtaagagatgtgcattctactcactatggtagaatttgtcctgttgaaacccct
gaaggtcaaaatatagggcttataaacacccttgctacttattctaaagtaaatgattta
ggctttgttgaggctccttacagaaaggttgtaaatgctaaggttagcgatgaagtcgtt
tatcttaccgcaactcaagaggaaaatttggtcatagcagcggcctcaactaagctagat
agcaaaggaaatatagtagaggattttgttgaggctagaaaagatggagaaaccatactt
gctaagaaagacgaggtacagcttatagatttatgttctggtatgatagtgggcgttaca
gcttctttgataccatttttagaacatgatgatgctaaccgtgcacttatgggttcaaac
atgcaaagacaagcagttccgcttttaacctgcaacgcacctattgtaggtaccggaatg
gagcaaaccatagcaagagatgcctggatggccataaaggcaaaaagaggtggagttgta
gaaaaggtagataataaaagtatttttataatgggcgaggatgataagggtccttttata
gaccattattctatggagaaaaatttaaggacaaatcaaaacacagtttataatcagcac
cctatcgtaaaaaaaggtgaaaagatagaagcagggcagattatagctgacggtgctagc
atggacgagggcgagttggccatcggtaaaaatgcccttatagcctttatgccttggaat
ggttataactatgaggacgctatagtagtaagcgaaaaaatgataagagaggatgctttc
acgagcgttcatatctacgaaaaagagatagaagcaagagagcttaaagacggcatagaa
gaaattacgcgtgatataccaaatataaaggaagaggatatttctcatcttgatgaaagt
ggtatagcaaggataggaactcacatcaagccaggcatgatacttgttggtaaggtatct
ccaaagggtgaggtaaaaccaactcctgaggaaaggcttttaagagctatctttggcgaa
aaagcaggacatgtggtaaataaatccttatacgctaccgcttcattagaaggtgttgtt
gtggatgttaaaattttcaccaaaaagggctatgaaaaagatttaagagctataaaagca
catgatgaggaaaaaatggccttggaaaaagaacatcatgataggcttttgatgatggat
agagaggaaattctaagggtttgttccttgctttcaaaatcagccttgcaaagtgagcaa
aaggtaggaaataaaacctacaaaaagggcgctaagatagatatagaggtcttaaaaacc
ataaaccgttttgccctaaattctttggtaaaagcttattcaaaagaagtgcaaaagcag
tatgaggactggaaaaaccacttccaaaatgagaaaaaaagattaaaaagcgagcatgat
gacaagcttgatattttagaaaaagatgatattttaccaagtggggttgtaaaacttgta
aaaatttacatagccacaaaaagaaagctaaaggttggcgataaaatggcaggtagacac
ggaaacaagggtatagtttctaccatagtgccagaggttgatatgccttatttaccaaat
ggtagaagcgttgatatagctttaaatcctttgggtgtgccatctcgtatgaacataggt
caaattctagaaagccacctaggacttgtaggcttaaggcttggagagcaaattcaagaa
atttttgataaaaagaaaaaagattttataaaagaacttcgctctaaaatgcttgaaatt
tgttctttagaacgatttactaaggaaaagaaatttatagaaagtttaagtgatgaagaa
ttggtttcttatgctagagattggagcaaaggtgttaaatttgccactcctgtttttgag
ggcactagtatagaagaatttgaaaaactttttgaaatggctaaggtttcaatggacgga
aaaagtgagctttacgacggacgtacaggagaaaagatagcagaacgtgtgcatgttggt
tgtatgtatatgctaaaacttcatcacttggtcgatgaaaaggttcacgcaagaagcacc
ggaccttacagtttggttactcaacaacctgttggtggtaaggctttatttggtgggcaa
agatttggagaaatggaagtttgggctttagaagcttacggtgcagcacacactctaaga
gaaatgcttactataaaatcagatgatgtcgagggacgttttagtgcttataaggcttta
acaaagggcgagaatgtgccagctacaggtattcctgagactttctttgttttggcaaat
gagcttaagtctttagctcttgatgtagagatttttgataaggacgagtaa
DBGET
integrated database retrieval system
