Carnobacterium inhibens: Q783_04225
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Entry
Q783_04225 CDS
T02884
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caw
Carnobacterium inhibens
Pathway
caw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q783_04225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caw03019
]
Q783_04225
03016 Transfer RNA biogenesis [BR:
caw03016
]
Q783_04225
Enzymes [BR:
caw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Q783_04225
Messenger RNA biogenesis [BR:
caw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Q783_04225
Transfer RNA biogenesis [BR:
caw03016
]
Prokaryotic type
tRNA degradation factors
Q783_04225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_2
M20_dimer
CvfB_2nd
SPATA25
Motif
Other DBs
NCBI-ProteinID:
AGY81501
UniProt:
U5S8V9
LinkDB
All DBs
Position
872057..874165
Genome browser
AA seq
702 aa
AA seq
DB search
MTEKQVFTKEWAGRTLTVEVGQLAKQANGAVLIRYNDTAVLTAAVASKKAKDVDFFPLTV
NYDEKMYSVGKIPGGFIKREARPSETATLTARLIDRPIRPMFAEGFRNEVQITNTVMSVE
QDCSPSFSAMFGSSLSLAISDIPFNGPIAGVDVGRIDGEYIINPTVEQEALSDIHLTVAG
TKEAINMVESGAEEVSEEDMLGALMFGHKAIQELVAFQEEIVAAIGKEKMTIQLLQIDAD
LEKEVNDAFQSKMIAAIQTEEKLAREENIEAVKEDAIAFYEEKYKEHDESNRINKEVKQI
VEDMEKNEVRRLITVDKIRPDGRKIDEIRSLASEIGLLPRAHGSGLFTRGQTQALSVATL
APLGEHQIIDGLGVENSKRFIHHYNFPQYSVGSTGPSRGPGRREIGHGALGERALAQVIP
SEEDFPYMIRLVAEVLESNGSSSQASICAGTLALMDAGVPIKAPVAGIAMGLVKEGENYT
VLTDIQGLEDHLGDMDFKVAGTSKGITALQMDIKIEGITQQILEEALTQAKKARMEILDE
LISTIAEPHEELSAYAPKIEMMQIKPEKIKVVIGRGGDQINAIIDETGVKIDIDQEGNIS
IASEDAAMIKRAKEIIEELTKDIEVGKVYSGKVKRIEKFGAFVEIAKGKDGLVHISELAN
ERVAKVEDVLTLGEVMDVKVIEIDKQGRINLSRKVLLKTEEK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaagcaagttttcactaaagaatgggcaggacgtacattaacagttgaagtt
ggacaattagcaaaacaagctaatggagccgttttgattcgttataatgatactgcagta
ttaacagcagcagtggctagtaaaaaagctaaggatgtagatttcttcccgttaactgta
aattatgatgaaaaaatgtattcagttgggaaaatcccaggtggttttattaaaagagaa
gcgcgtccaagtgaaacagcgacgctaacagctcgattaatcgatcgtccgattcgtcca
atgtttgctgaaggatttcgtaatgaagttcaaatcacaaatacagttatgtctgtagaa
caagactgttcaccgtctttctcagctatgtttggttcttctttatcactagcaatttca
gatattccatttaatggaccaattgctggagtagacgttggacgcattgatggagaatac
attattaatccaacagttgaacaagaagctttatcagatatacacttaacagttgctggt
acaaaagaagctatcaacatggttgaaagtggagccgaagaagtttcagaagaagatatg
ctaggcgctttaatgtttggacataaagctattcaagaattagttgctttccaagaagaa
atcgttgcggctatcggcaaagaaaaaatgactattcaattattacaaatcgatgcagat
ttagaaaaagaagtgaatgatgctttccaaagtaaaatgattgctgccattcaaacagaa
gaaaaattagctcgtgaagaaaatattgaagcagttaaagaagacgcaattgctttttac
gaagaaaaatataaagaacatgatgaatctaaccgtatcaataaagaagtaaaacaaatt
gttgaagatatggaaaaaaatgaagtacgtcgtttaattacagtcgataaaatcagacca
gatggtcgtaaaattgatgaaattcgttctttagcttcagaaatcggacttttaccaaga
gcacatggttctggtttgttcactcgtgggcaaacgcaagctttgtctgtagctacttta
gcaccattaggcgaacatcaaattattgatggattaggtgttgagaacagcaaacgattc
attcatcactataacttcccacaatactctgttggaagcactggcccatcacgtggacca
ggtcgtcgagaaatcggacacggagcattaggcgaacgtgctttagcacaagtgattcca
agtgaagaagatttcccatacatgattcgtttagtggctgaagttcttgaatcaaatggt
tcctcatcacaagcaagtatctgtgcgggtacattagctttaatggatgccggcgtgcca
atcaaagctccagtagctgggatcgcaatgggacttgttaaagaaggcgaaaactatact
gtcttaacggatattcaaggattagaagatcacttgggcgatatggactttaaagtagct
ggtacaagcaaaggaatcactgctcttcaaatggatattaaaattgaaggaattacgcaa
caaattttagaagaagccttaactcaagctaaaaaagcaagaatggaaattcttgatgaa
ttgatttctacaattgctgagccacatgaagaattaagcgcatatgctcctaaaattgaa
atgatgcaaatcaaaccggaaaaaatcaaagttgttattggtcgcggtggtgaccaaatc
aatgctattattgatgaaaccggcgttaaaattgatatcgatcaagaaggaaatattagt
attgcatctgaagacgcggctatgatcaaacgtgctaaagaaattattgaagaattaaca
aaagatatcgaagttggtaaagtttattcaggaaaagtaaaacgaattgaaaaattcgga
gcttttgttgaaattgctaaaggaaaagatggattagttcatatttctgaattagcaaac
gaacgtgttgcgaaagttgaagatgttttgactttaggcgaagtaatggacgttaaagtt
atcgaaatcgataaacaaggaagaatcaacctttctcgtaaagtattattgaaaactgaa
gaaaaataa
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