Clostridium acetobutylicum EA 2018: CEA_G2246
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Entry
CEA_G2246 CDS
T01864
Symbol
recJ
Name
(GenBank) SsDNA Exonuclease, RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cay
Clostridium acetobutylicum EA 2018
Pathway
cay03410
Base excision repair
cay03430
Mismatch repair
cay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CEA_G2246 (recJ)
03430 Mismatch repair
CEA_G2246 (recJ)
03440 Homologous recombination
CEA_G2246 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cay03400
]
CEA_G2246 (recJ)
DNA repair and recombination proteins [BR:
cay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CEA_G2246 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CEA_G2246 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CEA_G2246 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADZ21283
LinkDB
All DBs
Position
complement(2324322..2326085)
Genome browser
AA seq
587 aa
AA seq
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MEKWFMKNIKADYKAIAKAFGISEVIGKLLINRGIKDVKLIDSFLNPRFEKMHNPKDMKD
LKRASEILKSKIDSGKRIRIIGDYDVDGVISTYLLFTALKRCGADVDYDIPDRVKDGYGI
NIHIIEKCIEDSVDTIITCDNGIAAIEPINYAKECKLTVIVTDHHDIPFIEEENGQRSFI
SSNADAIINPKQKECKYPFKGLCGAGVVFKLIEVLYDEFKIHKKEFYGLSQFVAIATVCD
VVDLVDENRILVKNGLKLLNETRNVGLRSLIRQTNIEDKKISTYHLGFVIGPCINATGRL
DSAKRGIELLISENEDEASRLSKELFDFNNERKEMTQKGVDTAIDLIENTEMKNHRVFVI
YVPEIHESIVGIVAGRIREKYNVPTIVLTKTENGAKGSGRSIEGYNMFEELIKCKDILLK
FGGHPMAAGLSLEIENIDCLRERLNENTTLSAEDLIPKITLDMGMPLEYINYDFVKELNM
LEPFGKSNPKPMFGEKKAKVVSARIIGKNHNVLKLKFLSKNRRYIDGIYFGDIEEFEKIV
INNYGSEQMNKMYSGIENNIYLDIAFYPDINEYNGKVNIQIIVQHFR
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatggtttatgaaaaatataaaagcggattataaagctattgctaaagcattt
ggaataagtgaggttataggtaaactccttattaatagaggaattaaggatgtaaaatta
attgacagttttcttaacccaagatttgaaaaaatgcataatcccaaagatatgaaggac
ttaaaaagagcttctgaaatactgaaaagcaagatagattcaggtaaaagaataagaatt
ataggagattatgatgtagatggcgttataagtacttatttgctatttacagcattaaag
agatgtggggcagatgtagattatgatataccagacagagttaaagatggatatggaata
aacatacatattatagaaaaatgtatagaggattctgtagatactataataacctgtgat
aacggaattgcagcaatagaaccaattaattacgctaaggagtgtaaattaacagttata
gtaacggatcatcatgatataccttttatagaagaggaaaatggacaaagaagttttatt
agttcaaatgcagatgcaataataaatcctaagcaaaaggagtgtaaatacccatttaaa
ggtttatgtggagctggagttgtatttaagcttatagaagtgctttatgatgaatttaaa
atacataagaaagaattctatggtttgtctcaatttgttgctattgcaacagtatgtgac
gttgttgatttagtagatgaaaatagaattcttgttaagaatggacttaaacttcttaac
gaaactaggaatgttggtttaaggtcactaataagacagacaaatatcgaagataagaaa
atttctacatatcatcttgggtttgtaataggaccatgtataaatgctactggaagactg
gactctgctaaaagaggaattgaacttttaataagtgaaaatgaagatgaagctagtagg
ctttctaaagaactttttgattttaataatgaaagaaaagaaatgactcaaaagggtgta
gatactgcaatagatttaattgagaatactgaaatgaaaaatcatagagtatttgtaata
tatgttcctgagattcatgaaagtatagttggaatagttgctggtagaataagagaaaaa
tataatgttccaactatagtacttacaaagacggaaaacggtgctaagggttcaggaaga
tctattgaaggatataatatgtttgaggaattaattaaatgtaaagatatacttttgaaa
tttggaggacatcctatggcagcaggattgtctttagagatagaaaatattgattgctta
agggaaagattaaacgaaaatactacattaagcgccgaggatttaatacctaagataaca
cttgatatggggatgccccttgaatatataaattatgattttgtgaaagagttaaatatg
ctagagccttttggaaagtctaatccaaaacctatgtttggagaaaaaaaagcaaaggta
gttagtgcaaggattataggaaaaaatcataatgttttaaaattaaaatttctttctaag
aatagaagatatatagatggaatatattttggagatatagaagagtttgagaaaatagta
ataaataattacggtagtgaacaaatgaataaaatgtatagtggcatcgaaaataacatt
tatttagatatagcattttatcccgatataaatgaatataatggaaaagtaaatattcaa
ataatagtacaacattttaggtag
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