KEGG   Chitinophagaceae bacterium 13: COR50_04325Help
Entry
COR50_04325       CDS       T05360                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cbae  Chitinophagaceae bacterium 13
Pathway
cbae03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cbae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    COR50_04325 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbae03400]
    COR50_04325 (ligD)
Enzymes [BR:cbae01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COR50_04325 (ligD)
DNA repair and recombination proteins [BR:cbae03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     COR50_04325 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme Flavodoxin_3
Motif
Other DBs
NCBI-ProteinID: ATL46462
UniProt: A0A291QRF0
LinkDB All DBs
Position
complement(1046938..1048872)
Genome map
AA seq 644 aa AA seqDB search
MKPFYSPMLATLVDKPFDDPGWIFERKWDGYRAIASCHKNICKLYSRNHQSYLPAFDIIA
KAVEKIPHNVVLDGELVVLDKNGHDDFQRMQQYKKSKEGKLVFEVFDLLYLDGYETTALT
LLERKSLLKDLIADLDDPHVQYTDHSRAKGSEFFNKARKRGWEGMIAKEADSFYSEGLRS
KQWLKVKHHKQQEAIIAGYTRPKGSRSKFGALLLGAYNGKKLVFLGHCGGGFDEALLKEI
YGMMQAFKTQNNPFDTEFKPNGEPTWLKPKLVCEVKFAGMTEAGQLRQPIFLGLRTDKAA
KDVTLEVPRKITPKNAAKKVIKNSRGQTEKEEIMSKNTLNKETINMGSKQVPVTHTEKLY
WPKEGITKGDLLQYYESIAPYILPHLKLRPLSLHRFPEGIQKQGFYQKDVDTEHLPPFVK
TVPIYADSAKRDIDYVVCNNGATLIYLTNLGCIDMNPWLSRTRNLDQPDFIVFDLDPGKI
DFEAVVETAICIKEYLESLNITCYCKTSGSTGIHIFVPTGGKLDYDAGRLFAKYVATQVQ
AQLPKITSVTRAVSSRTKKVYIDYLQNSRGQTVASAYSVRPKPGATVSMPLDWTDINAQL
SIRDFDIHNVPGLLESKGDIWEGVLTEKNNFKKAIQLIGELEAK
NT seq 1935 nt NT seq  +upstreamnt  +downstreamnt
atgaagccgttttatagtcccatgcttgccaccctggtagataagcctttcgatgatccc
ggttggatttttgaacggaaatgggatgggtaccgggcgatcgcttcctgccataaaaat
atttgtaaattatattcacgtaaccaccaatcctatctgcctgcttttgacataattgcc
aaagctgtggagaaaattccacataacgtggtgttagatggtgaattggttgtattggat
aaaaatggacatgatgattttcaaaggatgcagcaatataaaaaaagcaaggaaggcaag
cttgtttttgaagtgttcgatctattatacctggatggttatgagacaacagctttgact
ttattggaaaggaaaagcctgctaaaggacttaatagcggatttggatgatccgcacgtg
caatataccgatcattccagggctaaaggttcggaattttttaacaaggcacggaagcgc
ggatgggaagggatgattgcgaaagaggccgacagtttttactctgaaggattgcgctca
aagcagtggttaaaagtgaaacatcataagcaacaggaagctattatcgcgggttacacg
cgcccgaaaggtagccgttcaaaattcggcgctttattactgggcgcatataatggcaag
aaattggtattcttaggtcattgtggcggtggattcgacgaagctttattgaaagaaata
tacgggatgatgcaagcatttaaaactcaaaataacccctttgataccgagtttaaaccg
aacggggaacccacatggttaaagccgaagctggtttgtgaagtgaaatttgccggtatg
acggaagccgggcaactccggcaacccattttcttaggtttacgaacagataaagcagcc
aaggatgttacccttgaagtgccccgcaaaattaccccgaagaatgccgctaaaaaagtt
attaaaaatagccggggacaaacagaaaaggaggaaattatgtcaaaaaacacgcttaac
aaggaaacgattaatatgggtagtaagcaagttccggtaacacataccgaaaaattgtac
tggccgaaggaaggtatcacgaaaggagatttgttgcaatattatgaatccattgccccg
tatatcttaccacatcttaaattacgccccctttccctgcaccgctttccagaaggtatt
cagaagcagggtttttatcaaaaagatgttgatacggagcacctgcctccgttcgtgaaa
acggtgccaatttatgcggattctgccaagagagatatcgactacgtggtttgtaacaac
ggtgcgaccttgatttacttaactaatctgggttgcatcgatatgaatccttggctgagc
agaacccggaatttagatcagcccgattttatagtttttgatctggatccgggtaagatc
gattttgaagcggttgtggaaacagctatttgtatcaaggaatacttggaatcgttaaat
attacttgctattgtaaaacttccggctctaccgggattcatattttcgtacctacaggt
ggcaaattggattatgatgccggtcgtttgtttgccaaatatgttgctacgcaggtacaa
gcccaattgccgaaaatcaccagcgtaacgagagcggtttcttccaggactaaaaaggtt
tatatagattacctgcaaaatagccgcggtcaaacggtggcttcggcttatagcgttcgt
ccgaaaccaggtgctaccgtttcaatgcctttagattggacagatataaatgcgcagctt
agcatccgggattttgatatccataatgtgcccggtttgctggaatcaaagggcgatatt
tgggaaggcgtactcacggaaaagaacaactttaaaaaggccattcaactgattggagaa
cttgaagctaaatga

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