Cellulophaga baltica NN016038: M667_05100
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Entry
M667_05100 CDS
T03562
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cbal
Cellulophaga baltica NN016038
Pathway
cbal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M667_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbal03019
]
M667_05100
03016 Transfer RNA biogenesis [BR:
cbal03016
]
M667_05100
Enzymes [BR:
cbal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M667_05100
Messenger RNA biogenesis [BR:
cbal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M667_05100
Transfer RNA biogenesis [BR:
cbal03016
]
Prokaryotic type
tRNA degradation factors
M667_05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Motif
Other DBs
NCBI-ProteinID:
AIY12630
LinkDB
All DBs
Position
1190678..1192867
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AA seq
729 aa
AA seq
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MSKKKKRSSGQKKNEITRGIFTVLEKEPNKSFNYKEIAAKIQISEANDRNDLIKRLVQLK
EKRRIVETSPGKYKAIENTKTYHTGTVDITGRGNAYIIIEGMDDDVFVPVNKINRAFHKD
TVEIYIYPRRKGKKLEGEVTKIVKRYKTSFVGIVDMQKSFAFVRIGDFRMYTDFFIPKDK
INNAQDGDKVIVEYNEWPDKGDSPYGTITQVLGKPGEHNTEIHSILAEYGLPYEFPVEVE
QFANDLDTSIKPEEIAKRRDMRDTLTFTIDPRDAKDFDDALSFEVLENGNYEIGIHIADV
SHYLTPDTVMDDEAYERATSVYLVDRVVPMLPEVLSNNACSLRPHEEKYTFSAIFEIDKK
AHVIDQWFGRTVINSDERFAYEEAQHIIENKVHSIPEDISIRGAAYEVSEAVVNATLKLD
ELAKIMRSRRMTAGAISFDKVEVRFNLTPEGEPESVYFKEAKDANKLIEEFMLLANRKVA
EFIGKQKPEKTFVYRVHDEPNEEKLMALNGIISRFGHKLDFKSKKTISSSLNQLLEDVKG
KGEQNMVDTLAIRTMSKAIYTTDNIGHYGLAFDYYTHFTSPIRRYPDVMVHRLLQHYLDN
GATAKKEVYEEKCKHSSDMEGLAASAERDSIKYMQIKFMEDHQDREFIGVISGVTEWGIY
VEIIENKCEGMVRISDIKGDYYNFDEKEYAIIGERTKTVYQLGDEVKVMVKNTDLVKRHL
DFTLIGKAE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaaaaagaaaaggtcttcaggacagaaaaagaatgaaattacaagaggtatt
ttcactgtcctagaaaaggaacctaataaaagttttaattacaaagagattgctgctaag
atacaaattagtgaagccaatgaccgtaatgacttaataaagagattagtacaacttaaa
gagaaacgtagaattgtagaaacctctccaggaaaatacaaggctatagagaatacaaaa
acataccatactggtactgttgatattacaggaagaggaaatgcctatatcataattgaa
ggtatggatgatgatgtttttgttcccgtaaacaaaataaacagagcttttcacaaggat
acggtagaaatttacatctatccgcgtagaaaagggaagaaattagaaggagaagttact
aaaattgtaaaacgctataaaactagttttgtagggattgtagatatgcaaaagtcattt
gcttttgtacgtatcggcgattttagaatgtataccgatttctttataccaaaagacaaa
ataaacaatgctcaagatggtgataaggttattgtagaatataacgaatggccagataaa
ggcgattctccttatggtactattacacaagtattaggaaaaccaggagaacacaataca
gaaatacattctattttagcagaatatggtttaccgtatgaatttcctgtagaagtagaa
caatttgcaaatgatctagatacttctataaaaccagaagaaattgcaaaacgtagagat
atgcgtgatacgctaacctttaccattgatccgcgagatgctaaagattttgatgatgct
ttatcttttgaagttctagaaaatggaaattacgagataggtattcatattgcagatgta
tctcattatctaacaccagatacggtgatggatgatgaagcatatgaaagagcaacttcg
gtatatttggtagacagagtagtacctatgttaccagaagttttatctaacaatgcgtgt
tcattacgtccgcatgaagaaaaatataccttctctgccatatttgagattgataaaaaa
gcacatgtcatagaccaatggtttggtagaacagttattaattctgatgagcgttttgct
tatgaagaagcacaacacattattgaaaataaagtacatagcattcctgaagatatttct
attagaggtgctgcttatgaagtttctgaagctgttgtaaatgctactttaaaattagat
gaacttgcaaaaattatgcgttctcgtagaatgacggcaggagctatttcttttgataaa
gtagaagtacgttttaatttaacaccagagggagaaccagaaagtgtttattttaaagaa
gcaaaagatgctaataaacttattgaagagtttatgcttttagccaatagaaaagtagca
gagtttatagggaaacaaaaacctgaaaaaacttttgtataccgggttcatgatgaacct
aatgaagagaaacttatggcattaaatggcattatttctcgttttggtcataagcttgat
tttaaaagtaaaaaaacgataagtagttctttgaaccagcttttagaagatgtaaaaggt
aaaggggaacaaaatatggtagatacccttgccatacgtaccatgagtaaggctatttat
accacagacaatattggtcactatggtttagcttttgattattatacgcattttacctca
ccaattcgtaggtatccagatgtcatggtgcaccgattattacaacattatttagataat
ggtgctaccgctaaaaaagaagtgtacgaagaaaaatgtaaacattcttcagatatggaa
ggcttagccgctagtgcagaacgtgattctattaagtatatgcagattaaattcatggaa
gatcatcaagatcgtgaatttattggcgttatttctggagttaccgaatggggcatctat
gtagagattatagaaaacaaatgcgaaggaatggttcgtatcagtgatataaaaggcgat
tattataattttgacgaaaaagaatatgctattattggagaacgtaccaagactgtatac
caattaggagacgaagttaaagtaatggttaagaacacagatcttgtaaaaagacatctt
gattttacattgattggtaaagcagaatag
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