KEGG   Cellulophaga baltica NN016038: M667_13175Help
Entry
M667_13175        CDS       T03562                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cbal  Cellulophaga baltica NN016038
Pathway
cbal03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cbal00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    M667_13175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cbal03400]
    M667_13175
Enzymes [BR:cbal01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M667_13175
DNA repair and recombination proteins [BR:cbal03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     M667_13175
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AIY14072
LinkDB All DBs
Position
complement(3039673..3042099)
Genome map
AA seq 808 aa AA seqDB search
MSLKKYYEKRDFENTPEPKGVLQPISQNQRFVIQRHAASRLHYDLRLEINGTLKSWAIPK
GPSMNPNDKRLAVRTEDHPLEYLTFYGTIPKGNYGAGNMIIWDTGTFEIDITETDKPLSE
QLAIGNIKLKFYGKKIGGRFALVRTSAKNDTEQWLLLKKKDDFAISTFYDAEILVPLSET
RTKKFTTQLKLGSIIQPMLASTSKKIFNDPNYIYELKWDGYRVISHINNTKVLLQSRNGI
NYNSKFSKLYDELSTIEHDVILDGEVVLVDKNGVSKFAELQNYPNSKGELRYYVFDMLFL
NGHSMLDLKLIERKSLILDVIGGLNIVQYCDHIEGMGTALYEKAIEVGMEGVMAKEKSSN
YVVGSRTEKWLKVKSIQSTDAIICGYTESTNSPELVGSLILGQYENNILKYIGNCGSGFT
DKSRRELQMLLSNYEISTSVFDKKIPLKGRKAHWTQPILECEVTFSERTKKNLLRNPVLK
RIKSEIPKLNSEPNTLAVQKKKIFSSKDIITIDGLKVPISNLDKIYWPESNLTKYDLIDY
YLNVSEYILPHLIDRPQNLHRHPNGIDQESFYQKDNEYLPDWFETISIYSKSSEREINYL
LCQNAASLIYMANLGCIEINPWSSRKLNLDYPDYGIIDLDPPKNMNFKKVILVAKAFHQI
LIDLNIESFCKVSGSKGIHIYLPMGHRYTYEEVRNFIKLLCHLVEERLPELTTLERTISK
RKGKIYLDYLQNRRGHTIASVHSVRPIMKAPVSAPVHWDELDGDLDPRKFLMKGYIKRLE
EIGDLFNGVSTSDFDIASTLNKLDATLN
NT seq 2427 nt NT seq  +upstreamnt  +downstreamnt
gtgagcttaaaaaagtattacgagaaaagagattttgagaacaccccagagcctaaaggg
gtgctacagcctatttctcaaaatcaacgtttcgttatacaacgccatgccgcaagtaga
ttgcattatgatctgcggttagaaataaatggcacgctaaaaagttgggcaataccaaaa
ggaccttctatgaatccaaacgacaaacgtttggcagttagaaccgaagatcacccgtta
gaatatttaactttttacggcactatacccaagggtaattatggcgctgggaacatgatt
atttgggatacaggtacttttgaaatagacatcacagaaacagataaaccgctttcggaa
caactggcaatcggtaatattaaattgaagttttacggtaaaaaaattggcggtcgtttt
gccctagttcgtacctcagctaaaaacgatacagagcaatggctgttacttaaaaagaaa
gatgacttcgcaatttctactttttacgatgcagaaatattagtgccgttatctgaaact
agaacaaaaaaatttacaacccagttaaaactaggttcgataatacagcctatgttggca
tctacctctaaaaagatatttaatgaccctaactatatatatgagcttaaatgggacggt
tacagagttatctcgcacataaacaacactaaagttttattacaatcaagaaacggtatt
aattacaattcaaagttttcaaaattatatgatgaactctctaccatagaacatgatgtc
atcttagatggcgaagtggttcttgtagacaagaacggtgtttcaaaatttgcagaacta
caaaattaccccaatagcaagggtgaattacgctattatgtttttgacatgttatttcta
aacggtcatagtatgcttgacctaaagttgattgaaagaaaaagtcttattctagatgtc
atcggtggtctaaacattgttcagtattgtgatcatattgaaggtatgggaactgcttta
tatgaaaaagcaatagaagtaggtatggagggtgttatggccaaagaaaaaagttctaat
tatgttgtaggatcaagaacagaaaaatggctaaaagtaaagtctattcaaagtaccgat
gccattatttgcggttataccgaatctacaaatagtcctgaattagttggttcgttaatt
cttggtcagtacgaaaacaatatattgaaatatataggcaattgcggctcgggctttaca
gataaaagtcgcagagaactgcaaatgctgctctctaattatgagatcagtaccagtgta
ttcgataaaaaaataccattaaaaggaagaaaagcgcattggacacaacccatattagaa
tgtgaggtcaccttttcagaacgcacaaagaaaaatttacttagaaatcctgttttgaaa
cggataaaaagtgaaatcccaaaattaaattctgagccgaataccctggcggtgcaaaag
aaaaagatattttcttcgaaagatataattactatcgatggcttaaaagtacccattagt
aatttggataaaatttattggccagaatcaaaccttaccaaatatgatttaattgattat
tacctaaacgtttctgaatacattttaccacatttaatagatagaccgcaaaatttacat
cgacaccctaacggcattgatcaagaaagtttttaccaaaaggataatgaatatttgccc
gattggtttgaaactatctctatttactcaaaatcttctgaaagggaaataaactattta
ctgtgtcaaaatgctgcttcattaatctatatggcaaatttgggttgtatcgaaatcaat
ccgtggagctcaagaaagttaaatttagattatcccgattacggaattatcgatttagac
cctccgaagaacatgaattttaaaaaggtaattctggtagcgaaggcattccatcaaatt
ttgatcgacctaaacatcgagagcttctgcaaagtatctggttctaagggtattcatatt
tatctacctatggggcatagatacacctatgaagaagttagaaattttattaaactgcta
tgtcatttggtagaagaacgtttgcctgagcttactaccttagaacgcaccattagcaaa
agaaaaggtaaaatttacctagactatttacagaatcgcagagggcatactattgcatcg
gttcactcggtaagacctattatgaaagcacctgtttcagcacccgtacattgggatgaa
ttagatggcgaccttgatccacgaaaatttcttatgaagggatacatcaaaagattagaa
gaaataggcgatttatttaatggtgtatctacgtcagattttgatatagcttcgacctta
aataaattagatgctacacttaattaa

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