Coxiella burnetii CbuK_Q154: CbuK_1015
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Entry
CbuK_1015 CDS
T00788
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cbc
Coxiella burnetii CbuK_Q154
Pathway
cbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CbuK_1015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cbc03400
]
CbuK_1015 (mfd)
Enzymes [BR:
cbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CbuK_1015 (mfd)
DNA repair and recombination proteins [BR:
cbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CbuK_1015 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACJ20225
LinkDB
All DBs
Position
964185..967658
Genome browser
AA seq
1157 aa
AA seq
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MIKVEMTPISPLQPPIPRSIDNRLQWGNLKGDSVSLAISTLAEKNQGPLLLITPDVHSAN
YLHRSLPFFSSADTPILHFPDWETLPYDYFSPHEDIISERLLTLYRLPRLSSGIIISALP
TLLQRLPPADHLEKNTFILSVGEKFSLQENRERLISAGYRSVQQVMEHGEYAQRGSIIDI
YPMGSPLPYRIELFDDEVTSIRSFDPESQRSVEKIESVRLLPAREYPLTKEAITHFRQSW
RAKFLGNPQEASIYQQISEGEAAAGIEYYLPLFFETTQTFFSYLPKNTTVILFEKLETVA
HQFWQEVEHRYEQLRHDLTRPLCPPSELFLSFEQLRIEIKNHTQIKISDAPIIEKTGQVN
FATENFPPLLIDHKASQPFARLKNFLHEITAIQGGRVLFCAETAGRRETLLEFLKEIDTT
PQAVKNWRTFLAENTRVGLTIAPLDKGVLLSSPPLAIISESQLFGEQIRQRRLEKERKID
PNLLIRNLTELHIGDPVVHIQHGVGRYLGLQTIKTSDQEAEYLTLQYADNDKIYVPVSSL
YLISRYAGADASHAPLQKLGSKQWEKIKEKTQKHIRDAAAELLDIYSRRQAATGFTFSIP
EKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLICGDVGFGKTEVAMQAAFIAV
QNNKQVAVLVPTTLLAEQHFYNFQDRFADWPVRIAAISRLRTQKQRQQITQELAEGKIDI
IIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERIKSLRAHVDILTLTATPIPRTLNMS
LSGIRDLSLITTPPAKRLSVKTFVHYYSPVLIREAILRENLRGGQVYFLHNDVATLAATA
EKLRTIIPEARLAIAHGQMRERDLERVMSDFYHQKYNLLVCTTIIESGIDIPTANTIIIN
RADRFGLAQLHQLRGRVGRSHHQAYAYLLIPDQEALTADTEKRLSAISQLDDLGVGFNLA
THDLEIRGAGELLGVEQSGQIHDIGFSLYLELLEEAVSALKAGREPQFEKPLHAASEIDL
GITTLLPEDYVPDVNARLILYKRLANCRNKREIQALKEELIDRFGPLPPAAQHLLQSAEL
RLIANELGIQKINIGPKYGYFHFDKKPAIDLIKLIKLIQTQPQRYQLQGDESLRFILSNR
TPQSKLETIYELIKNLK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttgattaaagttgaaatgactccgataagccctttacaacctcccattcctcgctccatt
gacaatcgactccaatggggaaatttaaaaggtgatagcgtcagccttgcaatcagcact
cttgcggaaaaaaatcaggggcctttgttattaatcacaccggatgttcactcggctaat
tatttacaccgttcattgccatttttttctagcgccgacacccctatcttacattttcct
gattgggaaacattgccatacgattatttttccccccacgaagatattatttctgaacgc
ttgctaacgctttaccgcttaccgcgtttatcgtcaggaattatcatcagcgctcttccc
accttattacaacgccttcctcccgccgatcacttagaaaaaaatacttttattttatcc
gtgggtgaaaagttttctttgcaagaaaatcgtgaacgtttaatatcggcgggttaccgt
tccgttcaacaagtgatggaacatggtgaatatgctcaacgcgggtcgatcatcgatatt
taccccatgggaagcccacttccttaccgaatcgaattatttgacgatgaagtaacaagc
attcgcagctttgatcccgaaagccagcgatccgtagaaaaaatagaatcggttcggttg
ttaccggcgagagaatacccgttaacgaaagaagccattacgcattttcgacaatcgtgg
cgtgcaaaattcttgggtaacccgcaagaggcttctatttatcagcaaatcagtgaagga
gaagcggcggctggtattgaatattatttaccgttgttcttcgaaaccacccaaactttt
ttttcctatttgccgaagaataccaccgttattttatttgaaaaactggaaaccgttgct
catcagttttggcaagaagtagaacatcgttatgaacaattacgccacgatttaacacga
ccgctctgcccgccctcagaattgtttttgtcttttgagcaattaaggatagaaataaaa
aatcatactcaaataaaaattagcgatgcacccatcattgaaaaaacagggcaagttaac
tttgctacggaaaatttccctcctttattaattgatcataaagcttcccaaccgtttgct
cgattaaaaaactttttacatgaaataacggctattcaaggggggcgcgttttattttgt
gccgaaacagccggccgtcgagaaactcttctagaattccttaaagaaattgatacaact
cctcaagccgttaaaaattggcgaacgtttttagcagagaatacgcgagttggccttact
atcgcgcctttggataaaggcgttttattatccagcccgcctttggccattatttcagaa
tcacaactcttcggcgaacaaatccgccaacgtcgcttggaaaaagaacgaaaaattgat
cccaatttattgattcgcaatttaacagaattgcatattggcgaccccgtggttcacatc
caacatggagtcggccgttatttgggcttgcaaaccattaaaaccagcgatcaggaagct
gaatatttaactttacaatatgcggataatgacaaaatttatgtgccagtttcttcgctg
tatttaatcagccgttatgccggtgctgacgcttcccatgctccccttcaaaaactcggc
agcaaacagtgggaaaaaatcaaagaaaaaacacaaaaacatatccgtgatgcggcggcc
gaattattagatatttacagccgccgtcaagcggcaacgggttttactttttctatacct
gaaaaagaatactctcttttccgccaagcttttccttttgaagaaacacctgaccaaagt
gccgccattaatgacgttattgtcgatatgtcttcaaaacgcagtatggaccgcctcatt
tgtggggatgttggttttggaaaaaccgaagtggcaatgcaagccgcttttatagccgtg
cagaataataaacaagtcgctgttttagttccaacgactttattagccgaacaacatttt
tataattttcaagatcgttttgccgactggccggttcgtattgccgctatttctcgctta
cgcacccaaaaacaacgccagcaaattacccaagaactggctgaagggaaaatagatatt
attatcggcactcataaattattaagcaaagatatccgatttaaagatttaggtttatta
attgttgatgaagaacaccgtttcggcgttacccaaaaagaacgaattaaatccttacgc
gcccatgtggatattctgacgctcacagccacgccgatccctcgaacattgaatatgtcg
ctttcaggtattcgcgacttgtcccttattacaaccccgccggcgaaacgcctgtctgta
aaaacttttgtgcactactacagtcccgtcttaattcgcgaagcgatattgcgcgaaaat
ttacgcggcggccaagtttattttttacataatgatgtcgcaacgctcgccgcaacggct
gaaaaattacgaacgattattcccgaagcccgtcttgcgatcgcccacggtcaaatgcgt
gaacgtgatttggaacgagtaatgtccgatttttatcatcagaaatataatcttttggtt
tgtacaaccattattgagtcagggatcgatattcccactgcgaatacgattattattaat
cgcgcggatcgattcggcttagctcaactccaccaacttcgcggtcgcgttgggcgttct
catcaccaagcctatgcttatttattaatacctgatcaagaagccctgacggcggataca
gaaaaacgattgagcgctatttcccaactggatgatctcggtgttggttttaacctggcg
actcatgatttagaaatccgcggcgcaggcgaattattgggcgtcgagcaaagcggacaa
attcatgatatcggattttctttatatttagaattgctggaagaggcggtaagcgcatta
aaagccggacgggaaccccaatttgaaaagccattacacgcagcgtctgaaattgatctt
ggcattacgacgcttttaccggaagattatgtccccgatgttaatgctcgtcttattctt
tataagcgcttagctaattgcagaaataaaagagaaatccaggcgctcaaagaagagctt
atcgatcgttttggcccgctacccccagcagctcaacatttgctccaatctgccgaactg
cgcttaattgcaaacgaactcggcatccaaaaaatcaatatcggccccaaatatggctat
tttcacttcgataaaaaacccgccattgatctcataaagttaatcaagttaatccaaacc
caaccccaacgttaccaactgcaaggcgatgaatccctgcgtttcattctttctaatcgc
accccccaatccaaattggaaaccatctacgaattaattaaaaatttgaagtaa
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