Cognaticolwellia beringensis: B5D82_11915
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Entry
B5D82_11915 CDS
T05628
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cber
Cognaticolwellia beringensis
Pathway
cber03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cber00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5D82_11915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cber03019
]
B5D82_11915
03400 DNA repair and recombination proteins [BR:
cber03400
]
B5D82_11915
Enzymes [BR:
cber01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5D82_11915
Messenger RNA biogenesis [BR:
cber03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B5D82_11915
DNA repair and recombination proteins [BR:
cber03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B5D82_11915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
Thioredoxin_8
IF2_N
TniB
AAA_22
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ASP48411
UniProt:
A0A222G9D9
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All DBs
Position
2797293..2799257
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AA seq
654 aa
AA seq
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MSTLQQSLKTTFGFDDFRIGQEQTITQLLNGDSSLAIFPTGAGKSLCYQLAAINLPHLTL
VVSPLLALMKDQLAFLHTKGISAASIDSTLTFEESQQITRDVRSGKIKILMVSVERFKNE
RFRQFIESIAISMLVVDEAHCISEWGHNFRPDYLKLPRYRQELNIPLVLLLTATATKQVK
LDMARKFAISQEHIVQTGFYRSNLDLSVLPVAEVAKNQTLVDLIRHQNGCGIIYVTLQQS
AEKVADFLQQQGISAKAYHAGFKDEVRKQIQQDFMQGKIPIIVATIAFGMGIDKSDIRFV
IHYDLPKSIENYSQEIGRSGRDKGNANCFTLANLDGIHTVENFVYADTPERSSIEYVLQN
IRSEVQNGQWELQVLSLSNASNIKQLPLKTLLVQLELLGVIDAKFSYFADFKFKFVTPKE
QIINLFNADRNEFLAQVFSCAKMKKIWGEPDFELMHSRFNAPRKRIVSALEYLADQQHIV
LETKKATEVFSVNIAALNNSELVDTLAHYFLEKEQAEIERISKLVAFFQSDRCLTQQLAH
YFDDQRAPINCGHCSVCRGQVAILPYSSKHQAVSSETTALAILQLQQHFSGLKSTTEHPA
DRLSIDTICRFLSGMSVPLFTRAKVRQLSYFGVCQYMRYAEIKAQVANCLKVNH
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgttacagcaatcattaaaaactacctttggctttgacgactttagaatcggg
caagagcaaaccattacgcaattacttaatggcgattcttcattagctattttccctacc
ggtgcaggtaaatcattgtgttatcaattagccgcaattaacttaccgcatttaaccttg
gtggtttcacctcttctggccttaatgaaagatcagttagcatttttacacactaaaggt
atatcagcagcaagtattgattcaactttaacatttgaagaaagtcagcaaattacgcgt
gatgtgcgctcggggaaaataaaaattttgatggtgtcggttgagcgttttaaaaatgag
cgcttccgtcagtttattgaatcaatcgctatttctatgttagtggtagacgaagcccat
tgtatttcagagtgggggcacaactttcgacctgattacttaaagttaccgcgttatcga
caagaacttaatatccctttggtgcttttgctgaccgcgactgccactaagcaagttaag
ctcgatatggcgcgtaagtttgctatatcgcaagagcatatcgtgcaaacgggtttttac
cgcagtaacttagatttatctgtcttgccggtcgcggaagtcgcaaaaaatcaaacgcta
gtagatttaattcgacatcaaaatggttgcggtattatttatgttaccttgcaacaaagt
gctgaaaaagtagcagactttttgcaacaacaaggcatatctgcaaaggcttatcatgcc
ggttttaaagatgaggttcgtaagcaaattcagcaagattttatgcaaggtaaaatccca
ataattgtcgcgactatcgcttttggtatgggaatagataaatctgacattcgctttgtt
atacattacgacttaccaaaatcaattgaaaattacagtcaagaaattggtcgttcaggc
cgagataaaggcaatgccaactgctttactttagctaaccttgatggcattcacacggta
gaaaactttgtttatgccgatactcctgagcgctcaagtatcgagtatgttttgcaaaat
atacgtagtgaggtgcaaaatggccaatgggaattacaagtactgagtttgtcaaatgct
agtaatattaagcaactaccgctgaaaaccttactggttcagttagagttactgggtgtt
attgacgctaagtttagttattttgctgatttcaaatttaaatttgttaccccaaaagag
caaattataaatttatttaatgctgatagaaatgaatttttagcacaagtttttagttgt
gcaaaaatgaaaaaaatctggggggaacctgattttgagctaatgcattcgcgctttaac
gcaccaagaaaaaggattgtttctgccttagaatacttagcagatcagcaacatattgtg
ttggaaactaaaaaggccactgaagtctttagtgtcaacatagcagcgttaaacaatagt
gaattagtcgacacgcttgctcattactttcttgaaaaagagcaagccgagatagaacgt
ataagcaagctagtggcattctttcaaagtgatcgctgtttaactcaacagcttgctcat
tactttgatgatcaaagagcgccgataaactgtgggcattgttcggtttgccgagggcag
gtagcaatactaccttattcgagtaaacatcaagccgtgagttcagaaaccactgcgctt
gctattttgcagctacaacagcacttttctgggttaaaatctactactgaacaccctgct
gataggttatctattgacactatttgtcgatttttatcgggtatgagtgtgccactcttt
actcgtgctaaagtgcgacagctaagttactttggcgtttgtcagtatatgcgctatgcg
gaaattaaagcacaagtcgccaattgcttaaaagtaaaccactag
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