Clostridium botulinum F 230613: CBF_2614
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Entry
CBF_2614 CDS
T01865
Name
(GenBank) RNA-metabolizing metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cbm
Clostridium botulinum F 230613
Pathway
cbm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBF_2614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbm03019
]
CBF_2614
Messenger RNA biogenesis [BR:
cbm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBF_2614
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
ADG00259
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Position
complement(2744421..2746130)
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AA seq
569 aa
AA seq
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MRVDKEKDKAKDRVKDKEKDKIKIIPLGGLNEIGKNLTAIEYKNDIVVIDCGLKFPDDDM
LGIDVVIPDITYLKKNINKVKGIFLTHGHEDHIGALPYVLRVVNVPVYGTKLTLGIVETK
LKEHGLLSSVELKCIKPREIIRLQNVSVEFIRTSHSIADTVAIAIHTPLGVVLHTGDFKI
DYTPIDGHVTDLARFAEIGKRGVIAMMADSTNVERPGYTMSESTVGEAFLNIFSGVKGRI
IVATFASHIHRIQQIIRAAEKFKRKVAVSGRSMENIMEVAMKLGYIKAEKNIFISIDAIN
KYPDDQVVIITTGSQGEPMSALSRMAASEHKKVNIKPGDKVIISATPIPGNEKLVSRVIN
QLFKKGADVIYETLADIHVSGHACQEELKLMHTLVRPKYFIPVHGEYRHLKQHGELACQL
GLPENHVMVSDIGDVIEVSRECIRKNGSVVSGQVFVDGLGVGDVGNIVLRDRKHLSQDGI
LTVVVTIEKVSGSVIAGPDIISRGFVYVRESEDLMEEAKDLVKKALEECERNHITEWAAI
KTNIKDVLRGFLYEKTKRKPMILPIIMEI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagtggacaaagaaaaagataaagcaaaagatagagtaaaagataaggagaaggat
aaaataaagattattcctttaggcggcttaaatgaaattggcaaaaatttaactgctata
gaatacaaaaatgatatagtagttatagattgtggccttaaatttccagacgacgatatg
ttaggaatagatgtagttattcctgacataacttatcttaaaaagaatattaataaagta
aaaggtatatttttaactcatggtcatgaagatcacataggagcattaccctatgttctg
agagtagtaaatgtaccagtatacggaactaagcttacattaggtatagtagaaaccaag
ttaaaagaacatggactactaagttctgtggagttaaaatgcataaagccaagggaaata
attagactccaaaatgtttctgtggaatttataagaactagccacagtatagcagacaca
gtagctatagctatacatacacctttaggggttgttcttcatacaggagactttaaaata
gactacactcctatagatggtcatgttacagatttagctagatttgctgaaataggtaag
cgtggagttattgctatgatggcagatagtacaaatgtagaaagaccaggctataccatg
tcagaaagtactgtaggagaagcttttctaaatatattctcaggagtcaagggaagaata
attgttgctacttttgcatctcatatccatagaatccaacaaataataagggctgctgaa
aaatttaaaagaaaagtagcggtttctggtagaagtatggaaaatattatggaagtagct
atgaagcttggatatataaaagcagaaaaaaatatatttataagcatagatgctataaat
aaatatccagatgaccaagtagttataataactacaggaagtcaaggagagcctatgtca
gctctttctaggatggcagcttcagagcataaaaaagtaaatataaagcccggtgataag
gtaattatatctgcaacacctatcccaggtaatgaaaaattagtatctagggtgataaat
cagttatttaaaaagggtgcagatgttatatatgaaacacttgcagatatccatgtatct
ggtcatgcatgtcaggaagaacttaaacttatgcatacattagtaagacctaaatatttt
atacctgttcatggagaatatagacacttaaaacaacatggagaacttgcctgtcaatta
ggattgccagagaatcatgttatggtttcagatataggtgatgttatagaagtaagtaga
gaatgcattagaaaaaatggttctgtagtgtcaggtcaagtctttgtagatggactaggt
gtaggagatgtagggaatatagtattaagagatagaaagcacttatctcaagatggtata
ttaacagtagttgttactatagaaaaggtttcaggctctgttattgcaggtcctgatata
atatcaagaggttttgtttatgtaagagaatcagaggatttaatggaagaagctaaagat
ttagtaaaaaaagctctagaagaatgtgaaagaaatcatattacagaatgggctgcaatt
aaaacaaatataaaagatgttttaagaggattcttatatgaaaaaacaaagagaaaacct
atgatattaccaattataatggaaatatag
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