Clostridium botulinum E3: CLH_1287
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Entry
CLH_1287 CDS
T00767
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
cbt
Clostridium botulinum E3
Pathway
cbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLH_1287 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cbt03019
]
CLH_1287 (dbpA)
03009 Ribosome biogenesis [BR:
cbt03009
]
CLH_1287 (dbpA)
Enzymes [BR:
cbt01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
CLH_1287 (dbpA)
Messenger RNA biogenesis [BR:
cbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CLH_1287 (dbpA)
Ribosome biogenesis [BR:
cbt03009
]
Prokaryotic type
rRNA helicases
CLH_1287 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
UTP25
Helicase_C_2
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ACD51293
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All DBs
Position
1364496..1365938
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AA seq
480 aa
AA seq
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MSKEFNKFELSGELLKAIDNLGYKTPSEVQEKAIPEILRNKDLVVKSQTGSGKTASFGIP
LCEKIDWDENKPQVLVLAPTRELAVQISEDISNIGRYKRINCVPIFGKQSIMDQERKLKQ
KTHIVVGTPGRVLDHIDRGSLDVSKINYFVIDEADEMLNMGFIKQVEAIIRRIPKKRVTL
LFSATIPDEIKNLCDKHMNRPIDIAIKSQNLTSDNVSHYAYHVGYNQKLDLLNNILISEM
PETSVVFCRTKENVDTVHEYLNKKGYSTNKIHGGMMQKDRLDTMEQFRRGDFRILVATDI
ASRGIDIEGITHVINYDIPVEKEAYVHRIGRTGRAGAKGVALTFCKDSGDRYLNEIEEYI
GFKLEVKDLPSKEDIIKSTEKAMEVLKSKPKKKKEKSNAVNKDIMKIYLNGGKKKKIRAG
DIVGAVTKIPGVTGEDIGIIDVQDLASYVDILNGKGKTVINGLKTATIKGKKLKCDRARG
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaatttaataaatttgaattaagtggtgaattgctaaaagcaatagataat
ttaggatataagactccatcagaggttcaagagaaagcaataccagaaatacttagaaat
aaagatttagttgtaaaatctcaaacaggaagtggaaagactgcatcttttggtattcca
ttatgtgaaaaaatagactgggatgaaaataaaccccaagtgttagtattagcaccaaca
agagaattagcagttcaaattagtgaagatatatctaatataggaagatataaaagaatt
aattgtgtacctatctttggaaagcaatcaataatggatcaagaaagaaaattaaagcaa
aaaacacatatagttgttggtactccaggcagagtattagatcatatagatagaggaagc
cttgatgtgtcaaagataaactattttgttatagatgaagcagatgaaatgcttaatatg
ggatttataaaacaagtagaagctataataagaagaataccaaagaaaagagtaacatta
ttattttctgcaactatacctgatgaaataaaaaacttatgtgacaaacatatgaataga
ccaattgatatagcaattaaatctcaaaatttaacaagcgataatgtgagtcactatgct
taccatgtaggatataatcaaaaactagatctattaaataatatacttatatctgaaatg
ccagaaacttcagttgtattttgtagaacaaaagaaaatgttgatacagtacatgaatat
ttaaataaaaagggctattcaactaataagatacatggtggaatgatgcaaaaagacaga
cttgatactatggagcaatttagaagaggtgactttagaattttagtggcaacagatata
gcttcaagaggtatagatatagagggaattactcatgttataaactatgatattccagtt
gaaaaagaagcatatgtacatagaataggaagaacaggacgtgcaggagctaaaggagta
gctttaactttttgcaaagattctggagacagatatttaaatgaaattgaagaatacata
ggttttaaactagaagttaaagatcttccaagcaaagaagacataattaaaagcacagaa
aaagcaatggaagtattaaaaagtaaaccaaagaagaagaaggaaaagagtaatgccgta
aataaagatataatgaagatatatctaaatggtggtaagaaaaagaaaattcgtgcaggg
gatatagttggagcagtaactaaaataccaggagtaactggtgaagatattggaataata
gatgttcaagatttagcttcatatgtagatatattaaatggaaaaggtaagactgtaata
aatggactaaagacagctacgattaaaggtaaaaagcttaaatgtgatagagcaagaggt
taa
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