Cyanistes caeruleus (blue tit): 111928689
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Entry
111928689 CDS
T05602
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae04510
Focal adhesion
ccae04512
ECM-receptor interaction
ccae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111928689 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111928689 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
111928689 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccae04147
]
111928689 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
ccae00536
]
111928689 (COL4A6)
Exosome [BR:
ccae04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
111928689 (COL4A6)
Glycosaminoglycan binding proteins [BR:
ccae00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111928689 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
111928689
NCBI-ProteinID:
XP_023781867
LinkDB
All DBs
Position
4
AA seq
1695 aa
AA seq
DB search
MGRTGALLLLLLWLGAELASAGGKKSYSGPCGGRDCTTGCKCFPEKGGRGRPGLIGLQGP
IGPPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGL
PGLDGCNGTTGSRGISGPDGFPGLPGLSGRPGPKGLKGEPVFAQGSLKGMKGENGLPGLD
GVPGPKGFPGPIGPAGPIGLQGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGMPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDQGLPGTSEFGGVGEKGEKGVPGLPGGRG
LLGLDGSEGIPGRKGHPGVPGYPGLDGAEGMKGELGDIGPPGPPVIIDREGVVISGAPGD
PGNMGAPGPPGDEGIVGLPGLPGAPGFPGLERDGIGPGGSPGIPGMKGEVGEPGRATIGI
PGPPGRGGLPGLPGAPGLPGSPRPSFFPVIILTGSIGSPGEPGQRGLPGALGPKGYKGEA
GDCACDGGVTRAGLKGISGPPGPSGSPGVPGAKGDGGDPGSVGAPGLQGPLASAGQQGLP
GLKGEKGDPSYATVKGTRGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGSKGHQGETGSPGVGYPGPRGVRGPPGDTGMDGFPGQAGLPGPPGITLPCIV
PGAYGPPGTPGFPGPPGPKGSKGFSGIPGQPGFHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSQGLPGLDGTDGLPGKMGASGLAGIKGSPGDILGAESGTLGKHGRPGLPGDKGLTGDI
GFPGPKGLDGRPGLLGVKGEQGHPGYSGVPGLQGPPGPGSPFGIEGKPGPLGSAGLPGPP
GCQGPPGVKGVAGDIGPQGPAGMKGFPGLDGAPGPPGERGFLGPPGPFGQDGRPGFSGPK
GEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTAGGKGSLGAVGLQGQKGDRGDIGPPGLP
VLGTSEQALQIKGDKGDPGLAGLGGFPGPRGDKGIPGKPGQPGLPGPVGPPSKERRLHGD
PGFPGPRGQPGLPGQKGAQGIMGFPGMPGERGSDGTTGTLGFPGPIGLPGPKGEQGESVG
VPGIAGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGHKGSPGDLGQEGPAGIPGNAG
LRGAPGPPGPPGQPGSVGFPGALGTAGPKGFHGFPGLNGLNGLPGTKGSPGTPGLSEAGL
KGPAGLPGTKGEEGSPGLGRGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLLSDIHG
RPGDAGVPGTHGSSGFPGPPGPRGPPGPASDQGDTGTPGFPGVLGLRGIKGDLGPTGPIG
LPGASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGHRGLPGRPGAPGITPQPEELT
APAGLPGLPGIDGVPGFDGDPGFHGPGGKPGPKGLPGRSGLKGRDGLPGIPGIAGDPGLS
GAPGPQGFEGAAGKPGSHGLPGMPGRSVGIGYTLVKHSQSDQIPPCPMGMNKLWDGYSLL
YVEGQEKSHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPV
YSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPQGWRSLWIGYSFLMHTAAGAEGGGQ
SLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKSGQ
LRTRVSRCQVCMKNL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacaggggcgctgctgctgctgctgctctggctgggcgcggagctggcgagc
gcgggtggaaagaagtcctacagtgggccatgtgggggccgcgattgcactactggatgc
aaatgttttccagagaagggtggacgtggtcgaccaggactgattgggcttcaagggcca
ataggaccaccgggatttactggcccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaaaggtgacaagggtccaatgggagttcca
ggatttcagggcatcaatgggatcccaggtcaccctgggcagtctggacctagaggcttg
cctggcctcgatggctgcaatggtaccactgggagtcgtggcatttctggaccagatggg
tttcctggcctacctggactgtctggtcgtcctggcccgaaaggccttaaaggagaacct
gtttttgctcaaggcagtctcaaaggaatgaagggtgaaaatggtcttcctggattggat
ggagtacctggcccaaaaggttttccaggtccaataggtcctgcaggccctataggatta
caaggtttgcagggtccagtgggtccccctgggccaccaggtccaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggcgatgtggggatgcctgggcctccaggt
cccccaccatctactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccaggtcctcaaggattccctggagaccaaggattgcctggtacctcggaa
tttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccaggtggcaggggt
cttctgggactggatggatctgaaggaattccagggagaaagggccatccaggtgttcca
ggctatccaggactggatggagctgaaggcatgaagggtgaattaggtgacattggtccc
ccaggtcctcctgtcattattgacagggaaggtgtagtcatttcaggtgccccgggtgac
cctggaaacatgggagcacctggtcctcctggagatgaagggatcgttggtttaccaggc
cttccaggggctccagggtttccaggcctggagagagatggaataggccctggagggtct
ccaggtattccaggaatgaagggtgaagtgggagaacctggaagagcaacaattggaata
ccaggccctccaggcagaggtggtttaccaggtctgcctggagcaccaggattgcctggt
tcaccacgcccttcatttttcccagtgataatcctgactggaagtattgggtccccaggg
gagcctgggcaaagaggtctgccaggagctttgggtccaaagggctacaaaggagaggca
ggtgattgtgcttgtgatggaggagttacaagagccggtctaaaaggcatctcaggtcca
ccaggtccatcaggaagccctggtgtacctggtgccaaaggtgatggtggagacccaggc
tctgtgggagcaccaggactgcaaggccctctggcttcagctggtcaacaaggacttcca
ggccttaagggagaaaaaggggatccatcctatgcaacagtcaaaggtactcgtggggac
cgtggtgcgacagcacccagaggaccttcaggcatcccaggaactccaggcagagatgga
cttccaggcttgccaggcccaccaggccctccaggtgatggtggactaggtttcccaggt
gaaaaaggtttgccaggattacctggctccaagggccatcaaggagaaactggttctcct
ggtgttggatacccaggtcctagaggagttcgtggaccaccaggtgacactggaatggat
gggtttccaggacaagcaggtcttccaggccctccaggtatcaccttgccctgcatagtt
cctggagcatatgggcccccagggactcccggctttccaggaccaccaggtccaaaaggc
agcaaaggcttttctggcattccaggccaacctgggtttcatgggtctaagggacagcca
gggtctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagag
caaggctcacaaggacttccaggactggatggaacagatggtttgcctgggaaaatgggt
gcttcaggcttagcaggaataaaaggatcgcctggagatatattaggagctgagagtgga
accctgggaaagcatggccgacctggactcccaggtgataaagggcttacaggtgatatt
ggatttccaggaccaaaagggctggacggaagaccaggccttctgggtgttaaaggtgaa
cagggtcatccaggatattcaggtgtccctggattgcagggccctcctggtcctggaagt
ccttttggcattgagggaaaaccaggacccttggggtcagctggccttccaggaccacca
ggctgtcaagggcctcctggagtcaaaggcgtggctggggatataggaccacaaggccct
gctggcatgaaaggcttcccaggtcttgatggtgctccaggacctcctggggaaagagga
ttcttagggccacctgggccttttggtcaagatggacgtccaggtttctctgggccaaaa
ggtgagaaagggtcttctggcctgcttggtttccctggcatgccaggactgcctggtgtc
cctggagtgaatgggtttaaaggaactcctggcacagctggaggaaaaggaagtctagga
gctgtgggacttcaaggtcaaaaaggcgacagaggtgatataggtccaccaggtcttcct
gttcttgggacttcagaacaggcactgcaaatcaaaggagacaaaggagatcctggatta
gctgggcttggaggattcccaggacctagaggtgataaaggaatcccagggaagcctgga
cagcctggtctcccaggtccagttgggccaccaagcaaagagagacgtcttcatggtgac
ccaggtttccctggtccacgtggacaacctggcctgccaggacagaagggtgcacagggt
atcatgggatttccaggaatgccaggagagaggggttcagatggcaccacaggaacactt
ggattcccaggacctattggccttcctggtccgaagggcgaacagggagagtctgttggt
gttcctggcattgctggaccaaaaggagagagaggagacccagggtttccaggagagaga
gggagagaaggactcaagggtgaaccaggctacccaggaaacactggggtgaatggacac
aaaggcagcccaggagatcttggccaagaaggaccagcaggaatccctggaaatgctggg
ctgagaggagcccctggcccaccaggacccccaggacagccaggatctgttggattccct
ggagctcttggaacagcaggacctaaaggctttcatggatttccaggtttaaatggtctg
aatggcttgccaggcacaaaagggtcccctggaacaccaggtctgagtgaagctggattg
aaaggacctgcaggtctcccaggtacaaagggtgaagaaggctctccaggcttgggaaga
ggagctgcaggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcct
atgggactgcccggcctgccaggaacacctggagtttctcttctgtctgatatacatggg
agacctggagatgctggtgttccaggcactcatgggagttcaggttttccaggtcctcca
ggaccacggggaccccctggcccagcttctgatcaaggtgacacaggcactccaggtttc
cctggtgttcttggcttgcgaggcattaagggcgatttgggacccactggtccaattgga
ctccctggagcatctggattcaaaggtgcaagaggtgagcctggcctaatggggatgcca
ggtaaagatgggcctccgggggatcctggttatgctgggctgaaaggtgaaatgggccat
cgaggtctccctggcagaccaggggctccaggaataaccccacagccagaagaactcaca
gcccctgcaggattacctggtctgccaggaattgatggtgttcctggctttgatggagat
cctggattccatggcccaggtggtaaaccaggcccaaaaggtttgccaggaagatctggc
ttgaaaggacgtgatggcttacctggaattcctggcatagctggggatccaggactttcg
ggtgccccaggaccacagggatttgaaggtgctgctgggaagccaggttcccatggtttg
ccaggaatgcctggtaggagtgtgggcattggatacactctagtgaagcacagtcaatca
gatcagatccccccatgtcccatgggaatgaataagctctgggatggctacagcttactg
tatgtggagggacaggagaagtcacataaccaggatcttggttttgctggctcatgtttg
cctcgcttcagcaccatgccttttatttactgcaacataaatgaagtgtgctattatgcc
agccggaacgacaagtcctactggctctccaccactgctcccatccccatgatgcctgta
tacagcgttcagatcccacagtacatcagccggtgctctgtgtgtgaagcaccttcgcag
gctgtggctgtgcacagccaggacatcaccatcccacagtgtccccagggctggcgcagc
ctgtggataggatactccttccttatgcacactgcggcaggggcagaaggtggaggccag
tcccttgtctcacctggttcctgcctggaggatttccgagctactccatttattgagtgc
agtggtgctcggggaacttgccattactttgccaacaaatacagcttctggctgacaaca
gtggagcaggagcagcagtttgtcagtgctcctccctcagagactctgaaatcggggcag
cttcggactcgcgtcagccgctgccaggtgtgcatgaagaacttgtag
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integrated database retrieval system
