Cyanistes caeruleus (blue tit): 111930604
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Entry
111930604 CDS
T05602
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
ccae
Cyanistes caeruleus (blue tit)
Pathway
ccae03420
Nucleotide excision repair
ccae04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111930604 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
111930604 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ccae04121
]
111930604 (DDB1)
03400 DNA repair and recombination proteins [BR:
ccae03400
]
111930604 (DDB1)
Ubiquitin system [BR:
ccae04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
111930604 (DDB1)
DNA repair and recombination proteins [BR:
ccae03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
111930604 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
111930604 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111930604
NCBI-ProteinID:
XP_023784469
LinkDB
All DBs
Position
5
AA seq
1084 aa
AA seq
DB search
MYGKTAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPS
ETGIIGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAP
TICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQES
ITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVT
LKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNL
GPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSD
PHRETDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASV
RLVSQEPKSLVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEH
EVACLDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF
ESSHYLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRP
TVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP
LYESPRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTA
PHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMV
YPEEAEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAE
KELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSA
VEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQN
LGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSF
HTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEEL
TRIH
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgtatggaaaaaccgccgtcatggagctcttccgccccaagggggagagcaaggatttg
ctgttcatcctgacggccaagtacaatgcctgcatcctggaatacaagcagaacggggat
agcattgacatcatcacccgtgcccatggaaatgtgcaggatcgcatcggccgcccttcg
gagacagggatcatcgggatcattgaccccgagtgccggatgatcgggctgcggctctac
gatggcctcttcaaggtcatccccctggatcgggagaacaaggaattaaaggccttcaac
atccgcctggaagagctccaggtcatcgacgtgaaattcctttacggctgccaagctccc
accatctgcttcgtctaccaggatccccagggccgccatgtgaagacatacgaggtgtcc
ctgcgggagaaggaattcaacaaaggcccttggaagcaggaaaatgtggaggccgaagcc
tccatggtcatcgcagtgccagagccctttggaggtgccattatcatcggacaggaatcc
atcacctaccacaatggggataaatatctggctatcgctcctcccatcatcaagcaaagc
accatcgtgtgccacaaccgtgtggatcccaacggatcgcggtatttgctgggagacatg
gaagggcggctcttcatgctgctcctggagaaggaagagcagatggatggcactgtcacc
ttgaaggatctgcgtgtggagctgctgggagagacatccattgctgagtgcctgacctac
ctggataatggagtggtgtttgttggctccaggcttggagattcccagctcgtgaagctc
aatgtggacagcaacgagcagggatcctacgtggtggccatggagaccttcaccaacctc
gggcccattgtggacatgtgcgtggtggacctggagagacaaggccaaggccagctggtc
acctgctctggggctttcaaagagggatcgttgcggatcatccggaacggcatcgggatc
catgagcacgccagcatcgacctgccgggaattaaaggattgtggccactgaggtcggat
ccgcaccgggagacagacaacaccttggtgctgtcctttgttggccagaccagggttctg
atgttgaatggagaggaagtggaagagacggagctcacaggatttgtggatgaccagcag
acgttcttctgtggcaatgtggcacatcagcagctgatccagatcacctctgcctcggtg
cgactggtcagccaggagcccaaatccctggtgagcgagtggaaagagcccaatgggaag
aacatcagcgtcgcttcctgcaacagtaatcaggtggtggtggccgtgggaagagccttg
tactacctggaaatccggccccaggagctccggcagatcagctgcacagagatggagcat
gaggtggcctgcctggacatcactcccctgggggactccaacggaatgtccccgctctgc
gccatcgggctctggactgacatctctgcccgcatcctgaagctcccgtccttcgagctg
ctgcacaaggagatgctgggaggagagattatccctcgctccatcctgatgacgaccttc
gagagcagccactacctcctgtgtgccctgggggacggagctctcttctacttcggcctc
agccttgagacaggcttgctgagtgacaggaagaaggtgaccctgggcacgcagcccaca
gtgctgaggacgttccgctccttgtccaccaccaacgtgttcgcctgctccgaccgcccc
accgtcatctacagcagcaaccacaagctggtcttctccaacgtcaacctcaaggaggtc
aactacatgtgccccctcaattccgacggatatcccgacagtttggccttggccaacaac
agcacactgaccatcggcaccattgatgagatccagaagctgcacatccgcactgttccc
ctctatgagtcgcccaggaaaatctgctaccaagaggtatcccagtgttttggggtgctc
tccagccggatcgaggtgcaggatgccagtgggggcaccacggcactcagacccagcgcc
agcacccaggccttgtccagcagcgtgagcaccagcaagctgttttccagcagcacagct
ccgcacgagacatccttcggagaggaggtggaagtgcataacctgctcatcatagaccag
cacacctttgaagtgctccatgctcaccagttcctgcaaaatgagtatgccctcagcctg
gtctcctgcaagctgggaaaggatcccaacacctacttcattgtgggcactgccatggtg
tatcctgaggaagcggagcccaagcaaggccggatcgtcgtcttccactactctgatggg
aagctgcagagcctggctgagaaggaggtcaagggagctgtgtattccatggtggaattc
aacgggaagctgttagccagcatcaacagcacggtacgcctgtacgagtggacagcggag
aaggaattgcgcacggaatgcaaccactacaacaacatcatggccctgtacctgaaaacc
aagggggatttcatcctggtgggagacctcatgcgctctgtgctgctcctggcctacaaa
cccatggaagggaatttcgaggagattgcccgggatttcaatccaaactggatgagtgcc
gtggagatcctggatgatgataatttcttgggagcggagaacgctttcaatctgtttgtg
tgccagaaggacagcgcggccacgacagatgaggagaggcaacacctgcaggaagtggga
ttatcccacctcggagagttcgtcaatgtcttctgccacggatccctggtcatgcagaac
ttgggagagacttccacacccacccagggatccgtgctcttcggcactgtcaatggcatg
atcggcctggtgacatccctgtcggaaagctggtacaacctgctcctggacatgcagaac
aggctcaacaaagtcatcaagagtgtggggaagattgagcattccttctggagatcattc
cacaccgaacggaagacagaaccggccacaggattcattgatggagacctgatcgagagt
ttcctggacatcagcaggcccaagatgcaggaagtggtggcaaatctgcagattgacgat
ggaagcgggatgaagagggaagccaccgtggacgacctcataaagatcgtagaggagctg
acccggatccattag
DBGET
integrated database retrieval system
