Cyanistes caeruleus (blue tit): 111931279 Help Entry 111931279         CDS       T05602                                  Symbol PDCD11 Name (RefSeq) protein RRP5 homolog   KO K14792   rRNA biogenesis protein RRP5 Organism ccae  Cyanistes caeruleus (blue tit) Brite KEGG Orthology (KO) [BR:ccae00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03009 Ribosome biogenesis [BR:ccae03009]     111931279 (PDCD11) Ribosome biogenesis [BR:ccae03009]  Eukaryotic type   90S particles    Other 90S particles     111931279 (PDCD11) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  S1 Spt6_S1 TPR_14 Suf TPR_19 NRDE-2 TPR_15 TPR_12 TPR_16 Motif Other DBs NCBI-GeneID:  111931279 NCBI-ProteinID:  XP_023785566 LinkDB All DBs Position 6 AA seq 1832 aa AA seqDB search MASMEENFPRGGIQKKPAEGKTPKPKLERDNLFDVQHEEKSQKRKRSQKDQGKQKRFKAD KTAAVKDNIMNIGPLTIEVLSEGMLLLGCIKEVNDYDLAVSLPNGLSGFVPVTQVSDAYS KLLTKQVAQGELLEELNSLPELFSPGTLVRCIVTSIEKSDDGRRSVKLSIDPKKVNKGLS STTLAVGMLLSGSVLSMEDHGYLIDIGVTGTHAFLPHEKAKNYIKAVKKGSDLKIGQNLN CLIVEVKNEGRVVCLSIDRSEVAASIATERQNWTLSNLLPGLVVKARVQKVAPLGMKLTF LSYFTGIVDFMHMDPEKSMSYSPDQVVKACVLSVHPTSRAVRLTLRPPFLHPGGAPRQLP AQRMGAVLEEAMVKTFYKQFGAIFELDDGTLAFARLKHLSKTRKSFKPGAFKEGCKHKCR IIDYSLMDEMCIVSLKHQIIEAQFLQYQDIHTGDVVQGKVVSLKPIGMQVKVADGIRGLV PSLHLSDVILKQPEKKYNIGDEVKCRVLECNPGGKKLILTLKKSLIQSKLPVLSNYEDAK PGLITHGFVVCAREFGCIVKFYNDVKGLVPKNELGSEPISCPDKVFFEGQVLKVMVLKCE PQQERLLLSFRLSSKPGPEDKWKCTPKEKQEVKYQIGEIVDVKILKKKDNGLEVSILEDE DNVVAWIPTLHLSDFIATSKLLWHCLQEGDVLPRVMYLSDKGEHIILSRKSSVISAVKEE QVVRSFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKVSMSDKFVTDTKDHFVVGQ TVIAKVMSIDEEKQRVLLNLKVSECSSGDSAADSIALLNQYFKELKEIKELLRRGKPSIC ELVPGKRVHLVVQDVREDGSALFSGSSVKGLTITATHYHLRDKSISPGEKRKAFVLHVDA LTSEVHVSLREELLKQRPKQRLRENSQHSVVVQHITEHFAIASLPGTGQLAAVPIACHFN DTFRFDSEKLRVGQTISVTLKAVKENNHGVLLAVQGPAKKNVFVRMRNESETVLEEMLPA VKHSLSPGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSFPTSTLKTGQKV TARVIGGRDVNTYRCLPITHPHFTQSIPELSIRPSEKEGEFTALLNLKEESSLNKLGLYN VGQTVTCFVKKYNMLKNWLEVEVAPDIRGRVPHLLLSLNTKVLKHPEKSFKNGQAISATV TGTDTSETNLCLSLTGIHSLEPDTISVGKVTKVTPHIGLTIALPGGKTGKVSIFHLNDTY TEDPLGNFEVGKIVRCYILSNENDKIQLSLRQSRLNPKIKSKVEDIEITSIKDVKKGQLV RGYVKSITPSGVFFGLSTSLLGRILFQNVSQYFVQNHSLYEKYLPEGKLLTAKVLGVNRK EEHIELSLLPEDTGMPSVLPESLGLPQYGTEEEKREADDEGKREEPKLKTKRRRGNYESG QEAKPKKRKICPADENDSGIEVYYREEEEDDQEEEAARKKSKVGKPGEAPRLQVSMGFTW DEDNAMDIPVLDQKEESSESEEEEDMRSKLKKRTKKEKDLEKQKREKELCKVEAALMDPS RQPQSADDFDRLVLGSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLN VWVALLNLENMYGSEETLMKVFERAVQYNEPLKVFQHLCDIYASSEKYKQAEELYHTMLK RFRQEKSVWLKYASFLLKQGQAEATHRLLERALKALPTKEHVDVISRFAQLEFHSGDTEH AKALFESTLSNYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLAPKKMKFFFKRYL DYENKFGTAESVLAVKRAALEYVETKSSLADT NT seq 5499 nt NT seq  +upstreamnt  +downstreamnt atggcatccatggaagaaaactttcctcgagggggcatccagaagaaacctgcagaggga aaaacacccaaaccaaagttagagcgggacaatttgtttgatgttcaacatgaagaaaaa tcccagaaaagaaaaaggagccagaaggatcaaggaaagcagaaaaggttcaaggcagac aaaacagctgctgttaaagacaatattatgaatattggaccactcacaattgaggtgctc agtgagggaatgctgctccttggctgtataaaagaggtcaatgactacgaccttgctgtc agtttgcccaacggcctctctggatttgtgccggtcacgcaggtcagcgatgcctacagc aaactgctgaccaagcaggtggcccaaggagaactcctggaggagctgaattcgcttcca gaactgttttctccagggacactggtcaggtgcatcgtgaccagcattgagaaaagtgac gatggacgtcgcagtgtcaagttatcgattgaccccaagaaggtcaacaagggcctgagc tctacaacactagcagtgggcatgctgctctctggctctgtgttgagtatggaagaccat ggctacctcatagatattggtgtcactggaactcatgctttcctgcctcatgagaaagcc aaaaattacatcaaagcagtcaagaaagggtctgacttgaaaataggccagaacctgaac tgcctcattgtggaagtgaagaatgagggcagggtggtctgtttgtccattgatcgatcg gaggtggctgcatccattgccacagagcgacagaactggacactttctaatttattgcca gggctggtggtgaaagctcgagtacagaaggtggccccacttgggatgaaactgacattt ctgtcttactttactggcattgtggatttcatgcacatggacccagagaaatccatgagc tattctccagatcaagtggtgaaggcctgtgtgctatctgtacaccccacgtcgagggca gtgcggctcacgctgcgcccgcccttcctgcaccccgggggagccccacgccagctccct gcccagcgcatgggggcagtgctggaggaggccatggtgaaaaccttctacaagcagttt ggggccatctttgagcttgatgatggcactcttgcatttgcacggttgaagcatctttca aaaaccagaaaatcctttaaacctggggcatttaaggaaggttgcaaacataaatgtcgg atcattgactacagcctgatggatgagatgtgtattgtatctctgaaacatcagattatt gaagcacagtttctgcaataccaggatatccacacaggtgatgtggtgcagggcaaagtg gtctctctaaaacccattgggatgcaggtgaaagtagctgatgggattagaggacttgtg ccatccctccatctctctgatgtgatcctgaagcagcctgagaagaagtacaacatagga gatgaagtcaagtgtcgggtgctggagtgcaatcctggaggaaagaagctgatccttact ctaaagaaaagtctcatccaatcaaagcttccagtcctctcaaattatgaagatgcaaaa ccaggcttgatcacacatggctttgtagtgtgtgcaagggagtttggctgcattgttaag ttctacaatgatgtcaaaggtctggtacccaagaatgagctgggctcagaacccatatct tgtccagataaagtcttctttgaaggccaggttcttaaagtaatggtcttaaaatgtgag cctcagcaggaaagactcctgctgtccttcagattatcaagcaaacctggccctgaggac aaatggaaatgtactccaaaggagaaacaggaagtgaaataccaaataggagagatagtt gatgtgaaaatcttgaagaagaaagataatgggttagaagtttccatcttagaagacgaa gacaatgtggtagcctggatccccacgctgcacctctctgacttcattgctacctccaag ctcctgtggcactgtcttcaagagggagatgtcctgcccagagtgatgtatctaagtgac aagggagagcacattatcttgagtagaaagtcttcagtgatttctgctgtaaaggaggag caagttgtgagaagcttctctgaaatccagcctggcatgctgttgactggttatgtgagg aatgtgatgccctttggagtgtttgtggagtttccttttggtgtgacaggactggcacct aaagtgagcatgagtgacaagtttgtgacagacaccaaggaccactttgtggtgggacag actgtgattgcaaaggtgatgagcattgatgaggagaagcagcgtgtgctcctcaatctg aaggtgtctgagtgcagctcaggagattctgctgcagatagcattgccctcctgaatcaa tatttcaaggagctgaaagaaatcaaggagttgttgagaagaggaaagcccagcatttgt gagttggtgcctgggaagagggtgcatctggtcgtgcaggatgtgagggaggatggctca gcactgttcagtggcagctctgtcaaaggtttgactataactgccacccactaccatttg agagacaaaagtatttctcctggtgagaagaggaaggcatttgtacttcatgtggatgcc ctcacatctgaggtacatgtttctcttcgggaagaactgttaaagcaaagacccaagcaa cggctacgagagaactcccagcactctgtggtggtgcagcacatcacagagcactttgcc atcgcatctctgccgggaacaggccagctggcagctgtccccatcgcctgccacttcaat gacaccttccgcttcgactcagaaaagctgagggtgggacagacaatctctgtgacctta aaagcagtgaaggagaacaaccacggggtcttgttagcagtacaaggcccagccaagaag aacgtttttgtaaggatgcgtaacgagtcagagaccgtattggaggagatgcttcctgct gtgaagcactcgctgtccccgggggatgttgttacaggtaccgttaaatctgtcaaaccg acccacgtcactgttgctattgatgacaagctgacaggttccatccatgcatcccggatt ctggacgaagtgcccataggctcttttccaacttctactctgaaaaccggacagaaagtg accgctcgagtcattggaggcagagatgtgaatacttacaggtgcctgccaatcacccat ccacacttcacacaatccattccagagctcagcattcgaccaagtgaaaaagaaggagaa ttcacagcattgctgaaccttaaagaagaaagttccctcaataaacttggactctacaat gttgggcagacagtcacctgttttgtaaagaagtataacatgctcaaaaactggctggag gtagaagtcgcccctgacattcgaggaagagttcctcacctgctgttgtctctgaacacc aaggtcttaaaacatccagaaaagagctttaaaaatggccaggcaatatcagctacagtg actggaacagatacctctgaaacaaacctctgcttgtcacttacaggaattcactcactg gagccagacaccatctctgtaggcaaggtaacaaaggtgactccacacattggtttgacc attgcgctgccaggtgggaagactggcaaagtcagcatctttcacctgaatgatacttac acagaggatcctctggggaacttcgaagttggcaagattgtcaggtgttacatcctctcc aatgagaatgataaaatccagttatctctccggcaatctcgactaaatccaaagataaaa agcaaagtagaggatattgaaataacaagtattaaggatgttaaaaaaggccagctagtg agaggctatgtcaaatcaatcactccatcaggtgtattctttggattgtccacttctctc ctgggccgaatcctgttccagaatgtttcccaatactttgtacagaaccattccttatat gaaaagtacctgcctgaaggaaaactgctcactgccaaagtgcttggggtgaatagaaaa gaagaacatattgagctctctctcctgcctgaggacactgggatgccaagtgtcttgcct gaatccctaggcctaccacagtatggaacagaggaagagaaaagagaggcagatgatgag ggaaaaagagaagagcctaagctgaagacaaaaaggagaagaggaaactacgaaagtggt caggaggcaaagccaaagaagaggaagatctgcccagcagatgaaaatgacagtggaatt gaggtgtattaccgtgaggaggaagaggatgaccaggaggaagaggcagctagaaagaaa tctaaggtagggaagcctggtgaagctcccaggctgcaagtttccatgggcttcacctgg gatgaagacaatgcgatggatatacctgtgctggatcagaaggaagagagctcagagagc gaggaggaggaggatatgcggtccaagctcaagaaacgaacaaagaaggagaaggacctg gagaagcagaagagggagaaggagctttgcaaagtagaggcagctctaatggacccgagt cggcagccccagtcagcagatgactttgaccgtctggtgctgggcagtcccaacagctcc atcctctggctgcagtacatggccttccacctccaggctacagagattgagaaggccaga gctgtggcagagagagcacttaaaacaatcagtttcagggaagaacaggagaagctgaat gtctgggtagctctgctgaacttggagaacatgtatggtagtgaggagacactgatgaag gtctttgagagagcagttcaatacaatgaacctctgaaagtcttccagcatctgtgtgac atctatgccagttctgagaaatataagcaagcagaagaattataccacacaatgctgaag cgttttcgtcaggagaaatccgtgtggctgaaatacgcctctttcctcctgaagcaaggc caggctgaggctacacacaggcttctggagcgtgctctcaaggctctgcccaccaaagaa catgtggatgtcatttcaaggtttgcacagttggagttccattctggggacacagaacat gccaaggccctctttgagagcaccctcagcaattatcccaagcggacagacatttggtcc atctacatggacatcatgatcaagcatggcagccagaaggaagtacgagacatctttgag agggtcatacacctgagcttggcaccgaagaagatgaaattcttcttcaaacgctacctg gattatgagaataaatttggtacagcagaaagtgtcctggctgttaaaagagcagcactt gagtatgtggagaccaagagttcccttgctgatacctaa

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