KEGG   Cyanistes caeruleus (blue tit): 111945486Help
Entry
111945486         CDS       T05602                                 

Gene name
LIG4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ccae  Cyanistes caeruleus (blue tit)
Pathway
ccae03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ccae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    111945486 (LIG4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccae03400]
    111945486 (LIG4)
Enzymes [BR:ccae01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     111945486 (LIG4)
DNA repair and recombination proteins [BR:ccae03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     111945486 (LIG4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT BRCT_2 RNA_ligase mRNA_cap_enzyme LIG3_BRCT Tox-REase-9 APG17
Motif
Other DBs
NCBI-GeneID: 111945486
NCBI-ProteinID: XP_023803925
LinkDB All DBs
Position
1
AA seq 912 aa AA seqDB search
MASAPVSQPPPKKTVASHVPFAHLCSTLEQIQKCKSRPEKTKYFKVFLESWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILNSVFTPVKGRIHVVHKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKNPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLPIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNIFEDVEFCVMTGTGKYSKTELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDNKAMPVDLIAELEERYWWNNCQLGIFRGNTVYVDCYAVVNEPESKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDHSRVEEMKVLRRTFGKKFKIVSELWVAHSVE
EGVAENEYQYLV
NT seq 2739 nt NT seq  +upstreamnt  +downstreamnt
atggcttctgcacctgtttcgcagcctcctcctaaaaaaacagtggcctctcatgtgcct
tttgcacatctgtgttctactctggagcaaatacagaagtgcaaatctcgtccagagaaa
accaagtatttcaaggtttttctggaatcctggaggaagttccatgatgcgcttcatcaa
aaagagaaggatgtcacagattccttttacccggctatgcgacttattctcccacagttg
gaaagagagaggatggcatatggaattaaagaaaccatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgccatgatcgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactaacaatagaacaagtcaatgaacatttagatgcaata
gctaataacaatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctgaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactaccgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctattatgttgttctctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcacccctagaaggttcattaacgccatttatt
cataacgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttgggccatgaagtactgagcaaaagatatgaaattttaaatagtgtatttaccccg
gtaaagggcaggatacatgttgtccataagagaaatgccagaacaaggaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcatttcctatgtgctgttgcggagacgccccctccaaatgaa
aaaccgaccattttccactccatttgtcgtgttggctctggctataccatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaagaaccctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgagccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagcgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaaaataagggaagacaaagaatggtacgagtgcatgact
tcagacatgttagaggacctcaggagcaaagcacaaggaaagctggcatctaagcacctt
cctatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagccgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatatatttgaagatgttgagttttgtgttatgacaggaacgggaaaatactcaaag
actgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacatactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaagagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcgcagctcaag
gaggtattctcaagaatgaaagacaataaggcaatgcctgtggacttgattgcagagctg
gaagaacgttattggtggaacaattgtcagcttggcatattcagaggaaacactgtttat
gtggactgttatgctgttgttaatgagcccgaaagcaaaatccctggaaccacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcattcacgggtagaagagatgaaagtgctcagg
aggacatttgggaagaaatttaaaattgtatctgagctgtgggtagcacactcagtagag
gaaggagttgcagagaatgaatatcagtacttagtttaa

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