KEGG   Cajanus cajan (pigeon pea): 109813644
Entry
109813644         CDS       T04868                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
ccaj  Cajanus cajan (pigeon pea)
Pathway
ccaj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ccaj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109813644
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccaj03021]
    109813644
Enzymes [BR:ccaj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109813644
Transcription machinery [BR:ccaj03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109813644
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 109813644
NCBI-ProteinID: XP_029130261
LinkDB
Position
Unknown
AA seq 2030 aa
MEDNPPSSLLDGTVVGIKFGMATRQEICTASISDSSISHASQLSNPFLGLPLEFGRCESC
GTSEVGKCEGHFGYIELPVPIYHPSHVSELKRMLSLVCLNCLKLRKTKFAASSSGLAQRL
LSPCCEELNASLVSIREVKTSDGACYLALRVSKSKIQNGFWSFLEKYGYRYEGDHIRALL
PCEAMEIIKRMPIETRKKLAGKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSVMSSDPSI
TILRKLLRKVEIIKSSRSGEPNFESHHVEANDLQSVVNQYFQIRGTSKAARDIETRFGVN
KELNESSTKAWLEKMRTLFIRKGSGFSSRNVITGDCYKRINEVGSXIPAEVAQRITFEER
VNIHNISYLQKLVDENLCLTYKEGVSTYSLREGSKGHIYLKPGQIVHRRIMDGDIVFINR
PPTTHKHSLQALFVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS
VENQLLSSHSGNLNLQLSTDSLLSLKMLVKRCFFDRAAANQLAMFLLLPLPQPALLKASS
GDSYWTSIQMLQCALPLCFDCTGGRYLIRQSEILEFDFNRDVLPATINEIAASIFFGKGP
KEALNFFDVMQPFLMESLFADGFSVSLQDFSISKAIKRIINRNIGKVSSLLYQLRSLYNE
LVAQQLEKHIRDIELPIINFALKSTKLGELIDSKSKSAIDKVVQQIGFLGQQLFERGRFY
SKGLVEDVASHFHGKCCYDEEGYPSAEYGLLKGCFFNGLDPYEEMVHSISTREILVRSSR
GLSEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQAGEKTQHLFPAGEPVGV
LAATSMSNPAYKAVLDASPSSNSSWELMKEILLCKVNFKNEPIDRRVILYLNDCDCGRSY
CRENAAYSVKNQLRKVSLKDAAVEFIIEYQQQRTHKGNSENDAGLVGHIYLDEMMLDELK
INMDDVFQKCQDRLNSFGRKKKLNPILKNTQLSFSESTHFAAPCITFIWPDSGDEDLDNT
VKVMSDTICPVLLETIIQGDPRISSASIIWVSPDTNTWVRNPYKSSHGELALDISLEKDV
VKQSGDAWRIVLDSCLPVLHLIDTSRSVPYAIKQIQGLMGISCTFDQAIQRLASSVKMVA
KGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKKCFERAAEK
CHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSEEIEGTDVYNFLHMVKSISNGE
EETNAGLGDDVDDLWDEENMDWDMSPQRTSGNEAVFEENLELLNVSTSNGWETNTNQTES
KTNEWSGWVSKTTEIKDGQSERAQEDSWKKTDVVQEDSSRFAWDANKTTDQTKSESNERS
AWGSKTGVIKEDSSRFNAWDTNTTTDQTKTKSNEWSAWGRKTDVLQEDSSTRSNAWDTNT
TTDQKKAKSNEWSGWGGNKSEIPASVSENVPDSWSNGKRNADVTQEDNSGSGAWGAKRTH
QTNTRSNEWSSWGKNKSEMPAGRSENVQEDSWSLGRKKDDVNHRDNSGSGSWVANRTDQT
KTKSNEWSGWGKNKSEMPAGGSENVQEDSWGSSKWKDDVTQKDNSGSGAWDANKTGRTET
KSNEWSGWGKNKSEVPAGGSENMLDTWGSSTKNDVTQENNSEAGAWGANRTHQTKTKSNE
WSSWGKNKSEIPAGGSENVLEDSWGTGKWKDNVSQKDNSGSGAWDANKIGQTKTELDDRS
AWGRNKVERTDGGSEKPQENAWGSGNWKAESKGGNNSWGKSKSSESQAWDSHNQSNQNAS
SQGWESHIASANSDSEKSFQWGKQGRESFKKNRFEGSQGRGSNAGDWKNRNRPPRAPGQR
LDIYSPEEQDILKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKM
GVGIDYVMVNRHSSFQESRCLYVVLKDGKKEDFSYRKCLDNWIRKKYPDLAESFVGKYFR
KPRPRLDQTAMPGGDQTAMPGGDQTVTPGQEEAVTSADQTSTPSPMETNE
NT seq 6093 nt   +upstreamnt  +downstreamnt
atggaggataatcccccctcaagccttttagatggaactgttgtcgggatcaaatttggt
atggctacgcgccaggaaatttgtacagcatccattagtgactcttcaatcagtcatgct
agtcagctgtcaaatccattccttggactgccccttgaatttggaagatgtgaatcttgt
ggtacctctgaagtaggaaaatgtgaaggtcactttggatacattgagctaccagttcca
atatatcatcctagtcatgttagtgaattgaaacggatgctgagcctggtctgcttaaac
tgcttaaaattgaggaaaacaaagtttgcagcttcaagcagtggattggcacagagatta
ttgtctccttgttgtgaggagcttaatgcttctctagtttctattcgggaggttaaaaca
agtgatggagcttgttatcttgcactgagggtttccaaatccaagattcagaatggtttt
tggagttttttagaaaaatatggctatcgctatgagggtgatcacattcgagccttgctt
ccttgcgaggcaatggaaattattaagagaatgccgatagagaccagaaaaaagcttgct
ggaaagggatattttcctcaagatggatatgttttgaagtatcttccagtaccaccaaat
tgcttgtctgtgccagtagtttcagatggcgtcagtgtcatgtcttcggatccttccata
acaattctcagaaaattgctcaggaaggttgaaatcatcaaaagctctagatctggtgaa
ccaaactttgagtctcatcatgtggaagcaaatgatttgcagtcggtggttaatcagtat
tttcaaattaggggtacttctaaagcagctcgtgatatagaaacacgttttggggtcaat
aaagagcttaatgaatcgtcaactaaagcatggcttgagaaaatgcgaactttatttata
agaaaggggtcagggttttcctcccgaaatgtgataactggagattgttataagaggata
aatgaagtaggatcctgaatccctgctgaagttgcccagcgaataacatttgaggagaga
gttaacatccataacatcagttatttgcagaagttagttgatgaaaatttgtgcctgacc
tacaaggaaggtgtatcaacttattcacttagggagggctctaaggggcacatatatctt
aagcctggtcagatagtccatcggaggattatggatggggatattgtcttcattaacaga
ccacctacaactcacaaacactctttacaagcacttttcgtctacatccatgatgaccac
acagtgaaaataaatcctctaatttgtggaccgcttggggctgattttgatggtgactgt
gtccatctgttttatcctcagtcgcttgctgctaaagctgaagttgtggagctattttct
gtggagaatcagctgcttagctctcacagtggtaatttgaacctacaattaagcactgat
tcgttgttgtcactgaagatgttggtgaagagatgtttttttgatagggcagcagctaat
caattggcgatgtttctgttgcttcctttgcctcagcctgctttactcaaggccagttct
ggtgattcttactggacttccattcaaatgttacagtgtgctttacctttgtgttttgat
tgcactgggggacggtacttgattaggcagagtgaaatcttagaatttgatttcaacagg
gatgttctgcctgcaacgataaatgaaatagcggcttcaattttctttgggaagggtcca
aaggaagcgctaaatttctttgatgtaatgcaaccctttttgatggaaagcttatttgct
gatgggtttagtgttagcttacaagacttttcaatttctaaagcaatcaaaagaattata
aacagaaacattggaaaagtttcttctctgttatatcagctgaggtccttatacaatgag
ctggtggcacagcagttggagaagcacattcgtgatattgaacttcctattattaatttt
gctctaaaatcaactaaactgggagaactaattgactcaaagagtaaatccgctattgat
aaagttgttcagcagattgggttcttagggcagcaactttttgaaaggggaagattctat
tccaaaggattggttgaagatgtagcttcacattttcatgggaagtgttgttatgatgag
gaaggttatccctctgctgagtatggattgctcaaagggtgtttctttaatggtttggat
ccatatgaagagatggtgcattcaatttcaacgagagaaatactagtgcgttcttcaaga
ggattatcagaacctggaacactctttaagaatttaatggccatccttcgggatgttgtg
atttgttatgatggaactgtgagaaatgtttgtagtaattccattatccagtttgagtat
gggatacaagctggagagaaaactcagcacttatttcctgctggtgagcctgtaggtgtc
ttagctgcaacttctatgtcaaatcctgcttataaggctgtccttgatgctagtcctagc
agcaattcttcatgggagttgatgaaggaaattttactctgcaaggtcaattttaagaat
gagcctattgatcgtcgtgtaattttgtacttgaatgactgtgattgtggaaggagttat
tgtcgggaaaatgccgcttattcagttaaaaatcaattgagaaaagtcagtctcaaggat
gcagcagtggagttcattattgaataccaacagcagcgcactcacaagggaaactctgaa
aatgatgctgggcttgttggtcatatttatctggatgagatgatgttagacgagctgaag
atcaacatggatgatgttttccaaaaatgccaagatagactaaattcatttggtcggaaa
aagaaacttaatcccattttgaagaatactcaattatcatttagtgagtctacacatttt
gctgcaccatgtataacattcatttggccagacagtggtgatgaggatttggacaatact
gtaaaggtcatgtctgacacaatctgccctgttcttttagaaacaataatccaaggagac
ccgcgcattagctctgcaagtataatctgggttagtccagatacaaacacatgggtgcga
aacccttacaaatcttctcatggtgaattggcacttgatatcagtcttgagaaggatgtt
gttaaacagagtggcgatgcttggagaattgtacttgattcctgtctccctgttcttcat
ttgattgataccagccgttctgtcccctatgctataaagcagattcagggattaatgggg
atatcatgtacttttgatcaagcaattcagcgtctagcatcatctgtgaaaatggtcgca
aaaggtgttcttagagagcatctcattctgttagctagcagtatgacttgtggtgggaat
ttggttggctttaatacaggtggatataaagctctgtctcgccaattaaatattcaagta
ccattcacagatgcaactctctttacccctaaaaaatgttttgagcgagctgcggagaaa
tgccatactgactctctgtcaagcatagttgcttcttgttcctggggtaaacatgtggca
gttggcacaggatcaaaatttgacgttgtatgggatgcaaatgagataaaatctgaagaa
attgaagggaccgatgtctataattttcttcacatggtgaaaagcatttccaatggggaa
gaagaaaccaatgctggtttgggtgacgatgttgatgatttatgggatgaagaaaatatg
gactgggacatgtccccacagcgtacctctggtaatgaagctgtttttgaagagaatctt
gaactattgaatgtttcaacatccaatggttgggagacaaatacaaatcaaactgaatca
aagaccaatgagtggtcaggttgggtaagtaaaacaactgaaataaaagatggccaatct
gaaagagcccaagaggattcttggaagaaaactgatgtcgttcaagaagactcttctagg
tttgcttgggatgcaaataaaacaacagatcagacaaaatcagaatctaatgaaaggtct
gcctgggggagtaaaactggtgtcatcaaagaagactcttctaggtttaatgcttgggat
acaaacacaacaacagatcagacaaaaacaaaaagtaatgaatggtctgcctggggaagg
aaaactgatgttctccaagaagactcttcaactaggtctaatgcttgggatacaaacaca
acaacagatcagaaaaaagccaaatctaatgaatggtctggctggggagggaataaatct
gaaataccagctagtgtatctgaaaatgtgccagattcttggagcaatggtaagaggaat
gctgatgttacccaagaagataattccgggtctggtgcttggggtgcaaagagaacacat
cagacgaatacaagatctaatgaatggtctagctggggaaagaacaagtctgaaatgcca
gctggtagatctgaaaatgtgcaagaagattcttggagcttgggtaggaagaaggacgat
gttaaccacagagataattctgggtctggttcctgggttgcaaacagaactgatcagacg
aaaacaaaatctaatgaatggtctggctggggaaagaataagtctgaaatgccagctggt
ggatctgaaaatgttcaagaagattcatggggctcgagtaaatggaaagatgatgttacc
caaaaagacaattccgggtctggtgcatgggatgcaaacaaaacaggtcggacagaaaca
aaatctaatgaatggtctggctggggaaagaataagtctgaagtgccagctggtggatct
gaaaatatgctagatacttggggctctagtacgaagaatgatgttacccaagaaaacaat
tctgaagctggtgcttggggtgcaaacagaacacatcagacaaaaacaaaatccaatgaa
tggtctagttggggtaagaataagtctgaaataccagctggtggatctgaaaatgtgcta
gaagattcttggggcacaggtaaatggaaagataatgttagccaaaaagacaattctggg
tctggtgcttgggatgcaaacaaaataggtcagacaaaaactgaattagatgataggtct
gcatggggaagaaataaggttgaaagaacagatggagggtcagaaaagccccaagagaat
gcttggggctctggtaattggaaagcagaatcaaaaggtggcaataactcttggggaaaa
tccaaatcctcagaaagtcaagcttgggattcccataatcagtcaaatcaaaatgcaagt
tcacagggatgggaatcacatattgcttcagctaattcagacagtgagaaaagttttcag
tggggaaagcaaggtagagaatcatttaagaaaaatcgctttgaaggttcgcaaggtcgg
ggttcaaatgccggtgactggaaaaataggaatcgcccgcctagagcacctggacagaga
ttggacatatactcacctgaggagcaggatattctgaaggatattgaacccattatgcag
tctatcagacggatcatgcaacaacaggggtacaatgatggggacccgctggctgctgaa
gatcaactttttgtacttgagaatgtctttgagcaccatccagataaagaaaccaaaatg
ggtgttggaattgattatgtcatggttaacaggcacagtagttttcaggaaagcagatgt
ttatatgtggttttgaaagatggtaaaaaagaagacttttcctaccggaagtgcttggat
aactggataaggaagaagtatccagatcttgctgaatcatttgtcggcaaatattttcga
aaacctcgtccaaggttggatcagactgcaatgccagggggggatcagaccgcaatgcca
gggggggatcagactgtaacgccagggcaggaggaagcagttacttcggctgatcagacc
tctactcccagccccatggaaaccaatgagtag

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