Ceratina calcarata (carpenter bee): 108627026
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Entry
108627026 CDS
T06061
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
3.6.4.13
]
Organism
ccal
Ceratina calcarata (carpenter bee)
Pathway
ccal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108627026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccal03041
]
108627026
Spliceosome [BR:
ccal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108627026
Complex C
U4/U6.U5 tri-SnRNP related factors
108627026
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
Flavi_DEAD
SLFN-g3_helicase
ResIII
T2SSE
TsaE
Motif
Other DBs
NCBI-GeneID:
108627026
NCBI-ProteinID:
XP_017883536
LinkDB
All DBs
Position
Unknown
AA seq
886 aa
AA seq
DB search
MSKYRRKESSSEDSDSEEERRKKDIKERDEFANRLKAKDESKIRKVAMPAGSGAAEAAKR
LKIMETDMREKLVPKLRVESRRKYLEKRKEDKVAELEADIIDDEYLFEEEILTERERRER
EHKKQLLQLAKEHEKARELERVQRYHMPLEKGKLEPEPETQDNEPPQSEQSKWESDQMSS
AVFRFGAKDRKAQQDYDLLLEDEVEFVQALRMPGSEKDRKHEHSPPPQVKALQTIQETKK
SLPIYPFRNDLIQAIKDHQVLIIEGETGSGKTTQIPQYLYEAGFAENNKIIGCTQPRRVA
AMSVAARVAHEMAVKLGNEVGYAIRFEDCTSHRTRIKYMTDGTLHREFLSEPDLASYSVM
IIDEAHERTLHTDILFGLVKDITRFRTDLKLLISSATLDATKFSEFFDDAPIFRIPGRRF
PVDIYYTKAPEADYIDACVVSILQIHATQPHGDVLVFLTGQDEIETCQEMLQERVRRLGS
KLSELLILPVYANLPSDMQAKIFQPTPPRARKVVLATNIAETSLTIDNIVYVIDPGFAKQ
NNFNSRTGMESLMVVPISKASANQRAGRAGRVAPGKCFRLYTAWAYQHELEDNTVPEIQR
INLGNAVLTLKALGINDLVHFDFLDPPPHETLVLALEQLYALGALNHRGELTKLGRRMAE
FPLDPMMAKMLLASEQYRCSEEVATIAAMLSVNGAIFYRPKDKIIHADTARKNFHVPGGD
HLTLLNVYNQWQQSDFSTHWCYENFIQHRSMKRARDVREQLVGLMQRVEMELVSGITETM
NIRKAITAGYFYHVARLSKGGHYKTAKHNQTVSIHPNSSLFQELPRWLLYHELVFTTKEF
MRQVTEIESKWLLEVAPHYYKPKELEDSTNKKMPKVTGRSRPDGTN
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtatagaaggaaagaatcctcgagcgaggatagcgacagtgaagaggaaaga
cgtaaaaaagatatcaaggagagagacgaatttgctaatcgtctgaaggcaaaagatgag
agcaaaatacgaaaagtggctatgccagctggttcaggagcagctgaggcagccaaaaga
cttaagattatggaaacagatatgcgagagaaactggtaccaaagttgcgtgttgaatcc
cgccggaaatatttagagaaacgtaaagaagataaggtggctgaattggaggctgatata
attgatgacgaatatttattcgaggaagaaatattaacagagcgggaaagaagagaacgg
gaacataagaaacaacttctgcaattagccaaagaacatgagaaagccagagaacttgaa
agggtgcaacggtatcatatgcccttggaaaaagggaaacttgaaccagaacctgaaaca
caggataatgaaccgccacaatctgagcaaagtaaatgggaatctgatcaaatgtcttct
gctgttttccggtttggtgccaaagacagaaaagcgcaacaggattacgatctcttgtta
gaggatgaagtagagtttgttcaggcattacgtatgcctggcagtgagaaagataggaaa
cacgaacatagtccacccccgcaagtgaaggcattgcaaactatacaggagaccaagaag
agtttaccaatttatcctttcagaaatgatctaatccaagctattaaagatcatcaggtg
ttgattattgagggagaaacgggttcgggcaagactactcaaattccacaatacttatat
gaagctgggttcgcagaaaataacaaaattattggttgtacacaaccacgaagagtagct
gctatgtccgtggcagctagagtcgctcacgaaatggcagtcaaattaggtaacgaggtt
ggatatgccattcggtttgaggactgcacatcgcatcgtactcgcattaagtacatgacc
gatggcacgttacaccgcgaattcctcagtgagccggatttggcctcttacagtgtcatg
atcatcgatgaggcacacgagcgtactttgcatacggatatcttgttcggattggtaaaa
gatataacaaggtttagaacagatctaaaactactaatttcgtccgccacgttggatgct
acgaagtttagcgagttcttcgacgatgcgccgatttttcggatacctggtcgacgtttc
cctgttgatatttattataccaaggcaccagaagcagattatatcgatgcttgtgttgta
tctattctccagatacatgcaacgcaaccgcacggtgatgttttagtattcttaacaggt
caagatgaaatagaaacgtgtcaagaaatgttgcaagagagagtgagacgattaggttca
aaattatcagaacttttaattttacctgtttacgcgaacctaccgagcgatatgcaggcg
aagatatttcagcctactccacctagagcaagaaaagtagttctcgctactaatatagca
gaaacgtcgttaactatagacaatatagtatacgtaatagatcccggattcgcgaagcag
aataattttaattctcgtacaggcatggagagtttaatggttgtaccaataagcaaagcg
tctgccaatcaacgtgccggccgtgctggaagagtagcaccgggaaaatgcttcagattg
tacacagcttgggcgtatcaacacgaactcgaagataatacagtgcctgaaattcagagg
atcaatctcgggaatgctgttttaacgttaaaagctctcgggataaacgatctagttcat
ttcgacttcttagatccgcctccgcatgaaactttagttttagccttagaacaattatac
gctttaggagctttgaatcatcgaggcgagttgacgaaactcggtcgaagaatggccgaa
tttccattggatcccatgatggcgaagatgctcctagccagcgaacaataccgttgctcg
gaagaagtagccacgatcgctgctatgttatcggtgaacggagccatcttctacaggccg
aaagataagattattcatgcagacacggcccggaagaatttccatgtacctggtggtgat
catttaacgttattaaacgtgtataatcagtggcaacaaagtgacttcagtacgcattgg
tgttatgagaatttcattcaacatcggtcgatgaaaagagctagagacgttagggaacaa
ttagtgggacttatgcaacgagtcgaaatggaactcgtatcgggcatcacggaaacaatg
aatatcagaaaggctattacggctggatatttttatcacgtggcgcgattgtcaaaaggg
ggtcactataaaactgccaaacacaatcaaacagtatcgattcatccaaatagttcattg
ttccaagagctaccgcgttggttgctttatcacgaattggtcttcaccacgaaagaattt
atgcgacaggtgacggaaattgagagcaaatggctattagaggtagccccccattattac
aagcctaaagaattagaagattctacgaacaaaaaaatgccgaaagtgactggaagatcg
cgcccagacggaaccaattaa
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