Cyprinus carpio (common carp): 109088397
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Entry
109088397 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: CDK-activating kinase assembly factor MAT1-like
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03022
Basal transcription factors
ccar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
109088397
09124 Replication and repair
03420 Nucleotide excision repair
109088397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccar03021
]
109088397
03400 DNA repair and recombination proteins [BR:
ccar03400
]
109088397
Transcription machinery [BR:
ccar03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
109088397
DNA repair and recombination proteins [BR:
ccar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
109088397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-RING_5
zf-RING_UBOX
TRAF3_RING
zf-C3HC4
zf-UDP
zf-RING_2
zf-P11
TRAF6_Z2
DUF604
Motif
Other DBs
NCBI-GeneID:
109088397
NCBI-ProteinID:
XP_018958101
LinkDB
All DBs
Position
Unknown
AA seq
309 aa
AA seq
DB search
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVEMLFVRGSGNCVQCNTPLRKSNFRV
QLFEDPAIDKEVEIRKKVLKIYNKREFDFSFLKEYNDYLEQVEDIVFNLTNNIDVERTKQ
IMEQYQRDNKDIIQRNKAKLTREQEELEELLLQEQQDXKQRRLETLQEEQRQLQAKRKNK
QALLDELEISKLPAALLLAQHKDRAVQLETQIEKQKQKGKPANIXSTGIMMGQTVSFASV
SRMEEVLYVYQPLCIDTYGPPIPELDQLGRLGYLNHVRTASPQDQAGGYTSGLACHRAIQ
DAFSGLFPS
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcagggatgtccgaggtgcaagacgaccaaatacagaaatccatctctgaag
ctgatggtgaatgtgtgcggacacacgctgtgtgagagctgtgtggagatgctgtttgtc
cgtggttcaggtaactgtgtgcagtgcaacactcctctcagaaagagtaatttccgcgtg
cagctcttcgaagatccagccatcgataaagaggtggagatccgcaagaaagttcttaaa
atctataataagagggaatttgatttttcctttctgaaagaatataatgactacctggag
caggtggaggacattgtgtttaacctgactaataacatagatgttgaacggaccaagcag
attatggaacagtaccagcgagataacaaagacattatacagagaaacaaagccaaacta
acacgtgagcaggaggagttggaggagctgttgttacaggagcagcaagatnacaagcag
aggagactagagaccctgcaggaggaacagagacaactacaggccaagaggaaaaacaaa
caggccctgctggatgaactggaaatttccaagttacctgcggctctgctgttggcccaa
cataaagatcgagctgttcaactggagacccagatagaaaaacaaaagcaaaaaggcaag
ccagcaaacatcntctctactggaataatgatgggtcaaactgtttcttttgcttctgtg
tctcgcatggaggaggtgttgtacgtctatcagcctctatgcattgacacatatgggccg
cccattccagaactggatcaattgggccgattagggtatctgaatcatgtgcgtacagcg
tctccgcaggatcaggctggtggttatacatcaggactggcgtgccatcgtgccatccaa
gatgctttcagtggcctcttcccctcatga
DBGET
integrated database retrieval system
