Cyprinus carpio (common carp): 109101394
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Entry
109101394 CDS
T05134
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109101394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccar03019
]
109101394
Enzymes [BR:
ccar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
109101394
Messenger RNA biogenesis [BR:
ccar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109101394
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109101394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
109101394
NCBI-ProteinID:
XP_018970304
UniProt:
A0A9Q9VFV9
LinkDB
All DBs
Position
27:906084..916822
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AA seq
533 aa
AA seq
DB search
MPKEKYDPPDPRRLYTVMSAEELASGKKSHWTELEISGRVRSLSSSLWTLTHLTALHINN
NILSRIPPEITKLPHLVYLNLSSNKLRSLPAELGNMVTLRELLLNNNCLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLRERDQMMP
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQSRAKLM
SEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQVAMANSEGSEVMLNRVMTKDNIGVAVLL
EVKKDLFASGSKQPSEKPLLLVANAHMHWDPEYSDVKLIQTMMFLSELKCIAERALGSIN
SASPTSDTSTIPTVLCADLNSLPDSGVVEYLSNGGVAENHKDFKELRYSDCLTNFSCNGK
NGKPDGSITHSFQLKSAYEGNLMPYTNYTYEFKGVIDYIFFSRTHMRVLGVLGPLETQWL
KDNNITGCPHPHIPSDHFSLLAQLEYHPPLPPLNGLHLPVHSSTACESKTLTE
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagacccacgcagattatataccgtcatgtcagca
gaggaactggccagtgggaagaagtcacactggaccgagttggagatttctgggcgggtc
agaagtctaagcagctcactatggacgctgacccatctgactgctctccacatcaacaac
aacatcctgagccggattcctcctgaaatcacaaagctgccccatctcgtctacctaaac
ctgtcctccaacaaactgcgcagcctgccagcagaactcggcaacatggtgactctcagg
gaattgcttttgaacaacaattgtttacgagttttgccttatgaacttggccggctgttc
cagttgcaaacacttggcctcaaaggtaatccattgtcccaggatatactcaacctgtat
caggagcctgatggaacaaggaaattattgaattacatgcttgacaatcttgcagtccac
ccagaacaactcccccaaagaccatggatcactttgagggagcgagaccaaatgatgccc
acagctgtgttcacagtaatgtgctacaacgtactgtgcgacaagtatgcaacaagacag
ttgtacggctactgtccctcatgggcccttaactgggagtacaggaagaaaggcatcatg
gaggagatcactaactgtgatgctgacatcattagcctgcagtctcgtgccaaactcatg
tcagaacaggagcggaagcatgtggacggctgtgctgtgttcttcaagactgagaaattt
actctggtgcagaaacacacagtggagttcaatcaggttgccatggcaaactcagagggc
tcggaggttatgctaaacagagtcatgaccaaagataacatcggagtagctgtcctgctg
gaggtgaagaaagacttgtttgctagtggatcaaagcagccttcagagaaaccgctcctg
ctggtagctaatgcccacatgcactgggatccagagtactcagatgtgaagctcatccag
accatgatgttcctgtctgagcttaagtgcattgctgagagggcattgggctccatcaac
tctgcatcacccacgtcagacaccagcaccatccctacagtcctgtgcgctgacctcaac
tccctcccagactctggtgtggtggagtatctaagtaatggtggagttgcagaaaatcac
aaagactttaaggaactgcgttacagtgattgtttaaccaacttcagttgcaacggcaaa
aacggcaagcccgatggcagcatcacacacagtttccagctgaagagtgcctacgagggg
aatctcatgccctacaccaactacacttatgaattcaagggcgtgattgactacatcttc
ttctctaggacacacatgcgtgttctgggcgttctgggtccactggagactcagtggctg
aaggacaacaacataaccggctgcccccacccgcacatcccctccgatcacttttccctt
ctggctcagctggagtaccacccgcctttaccccccctcaacgggctgcatctgcctgtc
cacagcagtactgcctgtgaaagcaagacgcttacagagtga
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