Cyprinus carpio (common carp): 109105449
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Entry
109105449 CDS
T05134
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
ccar
Cyprinus carpio (common carp)
Pathway
ccar04510
Focal adhesion
ccar04512
ECM-receptor interaction
ccar04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ccar00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109105449
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109105449
09142 Cell motility
04820 Cytoskeleton in muscle cells
109105449
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccar04147
]
109105449
00536 Glycosaminoglycan binding proteins [BR:
ccar00536
]
109105449
Exosome [BR:
ccar04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109105449
Glycosaminoglycan binding proteins [BR:
ccar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109105449
Hyaluronan
Extracellular matrix or blood plasma proteins
109105449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
109105449
NCBI-ProteinID:
XP_018974299
LinkDB
All DBs
Position
31:complement(19615420..19644759)
Genome browser
AA seq
2009 aa
AA seq
DB search
VQYTDTPYTEFLLSTYQNKEEILSYIENLSQKNGGTXTGKGLEFMLKQHFVEKAGSRAQQ
NVPQIAIVITDGDSQDEVDSQAQELRQRGIKIFAIGIKDANEALLRQIASEPYDQHIYSV
SDFGALDGISQSVIGKVCTTVEETQKEVIQTTRGCTETQADIVLLVDSSGSIGESDFEEV
RKFLRFFVDSFNLRPDKVRVGLAQFSDIPYQEFLLGEYSDKRDLHQKLNDLIYRGGGTNA
GLGLTFIRENYFRQARQNVPGIAIVITDGESNDDVEEPSQRLRNLGVSIFVIRVGRANME
KLRTIANIPHEEFLFSIDSYQELEGLKESLRNKVCFTVMLQLQAFEPKFADLFILVDSSA
SRQELQIIRSFLSRLIQQLNVGKNTNRVGLAQFSENVKEEFLLNTDKTRSEILSSIRSLT
LRPTGKRRIGNAIEYAHKNFFSDINGSRVSEGFKQFLLVISAGESADGVIQASRTIKNDA
VTVFAVGLSKADVDEMKYISSQPHSYKLVGNILQVQQNITSAIDKWEDPAVTRECMFDVV
ADIAFIVDQSSSIRSKNFNIVRNFLKNTIGGLDMGEGKIKIAVVLYSDFPRADVYFNTFA
DKTDILHYISSMPYGRGKTYTGAALKFAKEHVFTKARGSRRHHHVQQVAVVITDGKSTDN
VTSAAAALRRSGVTVFVLGIKDTEEDDLREIASYPYKKFVFSVKDFDKLNSLSHILTKTL
CNEIIDSIIPIDSHSFELQDCKQATKADIYFLLDESGSISYAEFDDMKNFTKQWLEAFEV
GNNNVRFGLVKFADSATIVFRLHDYNSKADLEKAVNAVIMQGGGTRTDLGLRKMIPLFEE
AERTRGEKVHKVLIVITDGESRGTEEPVEVPAKLLRTEQDVAIYAIGVKNASVPELELIS
GSPQRKYFVKNYDFLDEIKKNIYKEICVGCEDLFADIVFLLDGSESTHTEDFENMKDIMK
LVIERFAIGPDKERVAVVQYGTDTKEEFSLNKFDDKAVLLQTIENIKQMNGKTNTGNALT
AVSQSFAITKGGRTSALKFLIVLTDGESWDDVAEPAKVLRENFININAIGMKHANKSQIL
AIAGSHDGVFFEDAVASPEELSNDVLVKICNTVKNETSSLNLAELSSSVQLEIWGTSITT
AGRGTDCSLGDSHQYAGRGTDCSLGDVIGTAGRGTDCSLGDVINTTGRGTDCSLGDVIGT
AGRGTDCSLGDVINTTGRGTDCSLGDVIGTAGRGTDCSLGDVIGTAGRGTDCSLGDVIGT
AGRGTDCSLGDVIGTAGRGTDCSLGDVIGTAGRGTDCSLGDVIGTAGRGTDCSLGDVIDG
LEDNYDIELLKESSKRLKQSAAGFDGQKGHAGFPGDEGSMGGRGPPGLNGTKGHSGCRGN
RGMKGQRGYAGDKGEDGEDGLDGLDGEQGDAGLNGLPGPKGDPGSANMKGFKGSPGPKGH
KGVRGDPGAPGRDNTIKGTKGERGDTGLPGDQGPIGPIGRPGDSGDPVSITWCPRKKGRP
GLPGDSSNEKEKLDSQGFLVIMDKWVTLQMKKEKLDSQGFLVIMDKWDLQAQKGSKETLV
LQVYLEFRCGPPGDPGPKGTQGPEGFRGPLGQDGIDGYGRPGLKGQKGNTGRPGTVGPPG
ENGIDGYRECELVEYIHKNCPCCSARVSVISYNSESRSLIRFTDHLKKKSLLGAVRTLAL
ERTTKTRDIGQAMSFVARNIFKRVRSGRLMRKVAVFFTNGPSRDESSLATAMLEFKAADI
GLGVIAFNTANDVSRAMQVDDTGSYIIVDGRGVNRIKQCIICFDRCSPDPVCGVNLRPPP
LQMDLDLSVLMDGSDNLNTQQYVNMKELLVSLLDRIGVSSEPSRADRKTRLSVYQQSSVY
GSSYINEEFSFTKFKDRNIMKRHITNTVRQVGGTSHPEFALEWLITNVILKAERPRSKQM
VMAVFGEDSKHSKAQLDYLSRLCKCQNVVMFILMAGQKFDWTQMKELTSSPLEQHLVFLD
DRDYGTRFTYAFLHMLHRGILPGHHYRLL
NT seq
6027 nt
NT seq
+upstream
nt +downstream
nt
gtccagtatactgacacaccatatactgaatttttgctcagcacttaccagaacaaagag
gaaattctcagctacatcgaaaatcttagtcaaaaaaatggcgggacgnctaccggcaag
ggtttggagttcatgctgaaacaacactttgttgaaaaggccggaagtcgagcacagcag
aatgttcctcagattgccattgttatcacagatggtgactctcaagatgaggtcgactca
caggctcaggagctgaggcaaaggggaatcaaaatattcgccatagggatcaaagatgca
aatgaggcgttactgaggcagatcgcgagcgagccatatgatcagcacatctacagcgta
tcagactttggagctctggacggaatctctcagagtgtaatcggaaaagtttgtaccact
gtagaggaaacacaaaaagaggtcatccagacaacaagaggctgcaccgaaactcaggca
gatattgtgctccttgttgactcatctggtagcattggagagagtgatttcgaagaagtg
aggaagttcctccgtttttttgtggacagttttaaccttagacccgacaaggtgagagtg
ggacttgctcagttcagtgacataccgtaccaagagttcctgctaggtgaatattcagat
aagagagacctgcaccaaaagttgaatgatctcatctaccgtggaggaggcaccaacgct
ggtctgggtctgactttcatccgtgagaattactttagacaggccagacagaatgttcct
ggcattgccatagtcatcacagatggggaatcaaatgatgatgtggaggaaccttcccag
agactaagaaacctaggagtttccatctttgtcatcagggtgggaagggccaacatggaa
aaactgcgtaccattgctaatattccacatgaagagttcttattcagtatcgacagttat
caagaactggaaggtctaaaagaaagtctacgcaacaaagtgtgctttactgtgatgctc
cagttgcaagcttttgagccaaaatttgctgatctcttcatattggttgatagttcagca
tctagacaagagctgcaaataataaggagttttctttcaagactgatccagcagctcaat
gtgggaaagaatactaatcgtgtcggcctggctcagttcagcgaaaatgtcaaggaggag
ttcctgctaaatactgataagaccaggagtgagattttgtcatctattcgcagcctgaca
ctgaggcctacagggaagcgtagaattggcaatgcaattgaatatgctcataaaaatttc
ttcagtgatatcaatggaagccgtgtctctgaaggctttaagcagtttctgttagtcatt
tcagctggagaatctgccgatggtgtcatccaagcatcccgcacaatcaaaaacgatgca
gtgacagtttttgctgttggcttgagcaaagctgatgtagatgagatgaagtacatctct
agtcaaccacacagctacaagttagtaggtaacatcctacaagtgcaacagaatattacg
tctgccattgacaaatgggaagatcctgctgtcacaagggagtgcatgtttgacgtggtg
gcagatattgctttcattgttgatcagtccagcagtatcagatccaaaaacttcaacatt
gtgcgcaactttctcaagaacaccattggaggtcttgacatgggtgagggaaaaataaaa
atagccgtggtcctctatagtgacttccctcgagcggatgtgtacttcaacaccttcgct
gacaagactgacatcctgcactacatcagcagcatgccatatggtcgtggtaaaacatac
actggagctgctctcaagtttgccaaagagcatgtgttcaccaaagcaagaggcagcaga
agacatcatcatgttcagcaggttgctgttgttatcactgatggaaagtcaacagataat
gtgaccagtgctgcggcagcattgcggcgatctggcgtcactgtatttgtgcttggtatc
aaagacactgaggaggatgacttgagagagattgcatcctacccatataaaaagtttgtg
ttcagtgtgaaagactttgataaactaaattcactttcacatattttaaccaaaacactt
tgcaatgaaattatagattccattatacctatagactcacacagctttgagttacaagat
tgcaagcaagcaaccaaagccgacatatactttcttctggatgaatcaggaagtatatcc
tatgctgagtttgacgatatgaagaactttactaagcaatggcttgaagcatttgaggtt
ggaaataacaatgtgcgctttggattggtgaagtttgcagacagcgcaaccatagttttc
cgcttacatgactataactcaaaagctgatctcgaaaaggcagtgaatgcagtcattatg
cagggagggggcaccaggactgatctggggttgagaaaaatgatcccgctattcgaagaa
gctgaacgaacacgtggggaaaaggttcataaggtcctgattgtcatcacagatggcgag
tcaagagggacagaagagcctgtagaagtccctgctaaacttttgagaacagaacaggat
gtcgccatttatgcaattggtgtgaaaaatgcatctgtgccagagctggaattaatatct
ggcagcccacaaagaaaatattttgtcaaaaactatgatttccttgatgaaatcaagaaa
aacatctataaagaaatatgcgttggttgtgaagatctttttgcagatattgtcttcctg
cttgatggatcagaaagcactcatactgaggattttgaaaatatgaaggacataatgaag
cttgtgatagagaggtttgcaattggaccagacaaggagcgtgttgcagttgttcagtac
ggcacagacacaaaggaggagttttccttaaataaatttgatgataaagctgtattatta
cagacaattgaaaatatcaaacagatgaatggaaaaactaacactggaaatgcacttaca
gcagtatcacaatctttcgccattactaaaggaggacgcaccagtgctttaaagttcttg
atagttcttacagatggagaaagttgggatgacgtagccgagcctgctaaagtcttgaga
gaaaatttcatcaacattaatgccattggtatgaaacatgcaaacaaatctcagattctt
gccattgctggatcccatgatggagtgttctttgaagatgcagttgcgtccccagaagaa
ttaagcaatgacgtccttgtcaagatctgcaacacagtgaaaaatgagacatcatcactt
aatctggcagaattgtcgtcatcagtacagctggaaatttgggggacttcgatcactaca
gctggacgcggcacagactgtagtttgggggacagtcatcagtacgctggacgcggcaca
gactgtagtctgggggacgtcatcggtacagctggacgcggcacagactgtagtttgggg
gacgtcatcaatacaactggacgcggcacagactgtagtctgggggacgtcatcggtaca
gctggacgcggcacagactgtagtttgggggacgtcatcaatacaactggacgcggcaca
gactgtagtctgggggacgtcatcggtacagctggacgcggcacagactgtagtctgggg
gacgtcatcggtacagctggacgcggcacagactgtagtctgggggacgtcatcggtaca
gctggacgcggcacagactgtagtctgggggacgtcatcggtacagctggacgcggcaca
gactgtagtctgggggacgtcatcggtacagctggacgcggcacagactgtagtctgggg
gacgtcatcggtacagctggacgcggcacagactgtagtctgggggacgtcatcgacggg
ctggaagataattatgacattgagcttttaaaggagagttcaaaaagacttaagcaaagt
gctgctggctttgatggtcagaagggccatgctggatttccaggagatgaaggtagtatg
ggaggtcgaggaccaccaggactgaatggaactaagggacacagcggttgtcgtggaaac
agaggaatgaagggccagagaggatatgctggagataaaggagaagatggggaggatggg
ctggatgggctggatggagaacagggtgatgctggcctaaatgggcttccaggacctaaa
ggagacccaggcagtgctaatatgaagggtttcaaaggcagtcctggacctaagggacac
aaaggagtgagaggagatcctggtgcaccaggaagagacaacacaatcaaaggtacaaaa
ggcgagaggggagatactgggctcccgggtgaccagggccctattggacccataggcaga
cctggagatagcggtgatcctgtgagtattacctggtgccccaggaagaaaggccgtcca
ggactgccgggtgactcttcaaatgaaaaggagaagctggacagccagggcttcctggtt
atcatggacaagtgggtgactcttcaaatgaaaaaggagaagctggacagccagggcttc
ctggttatcatggacaagtgggacctccaggcccaaaagggttccaaggagacattggtc
cttcaggtgtacctggaattcaggtgtggtccaccaggtgacccggggcccaagggaaca
cagggaccagagggattcagagggcctctgggacaagatggaatagatgggtatggacgt
ccagggctcaaaggacaaaagggaaacactggtcgtccgggtactgtaggtcctccagga
gagaatgggatagacggatacagggaatgtgaactggtcgaatacatacacaaaaactgt
ccttgctgctccgcgcgggtgtctgtgatctcctacaacagcgagtccaggagcctgatc
cgtttcacagaccaccttaagaagaagagccttctgggagctgtaagaactttagctctt
gagagaaccacaaaaaccagagacatcggacaagccatgagctttgtggccaggaacatc
ttcaaacgtgtccgaagtggcaggcttatgaggaaagtggctgtgttcttcacaaacggg
ccgtcgagggatgaatcgagtcttgcaacagccatgctggagttcaaggctgcagacatt
ggcctcggagtgatcgcctttaatactgctaatgatgtgagccgagcaatgcaggttgat
gacacaggaagctacattatcgttgatggcagaggagtcaatcgcattaaacagtgcatc
atttgttttgatcgttgtagcccagacccagtgtgtggtgtaaacctgcggcctccaccc
ctgcaaatggatttggacctgtctgtgctgatggatgggtcagataacctgaacactcaa
caatatgtaaacatgaaggagcttctggtgtctctgttggaccggatcggtgtgagcagc
gagccgagcagagcagacagaaaaaccagattgtccgtctaccagcagagctccgtttat
ggctcatcttacatcaacgaggagttcagcttcactaaatttaaagatcgtaatatcatg
aagagacatatcactaatacagtgaggcaagtgggcgggacatcccatcctgagtttgct
ttggagtggctgatcactaacgttatccttaaagcagaaagaccacgaagcaaacaaatg
gtcatggctgtttttggtgaagattctaagcacagcaaagctcagcttgattatttgtct
agactgtgtaagtgtcagaatgttgtgatgtttatcctcatggcgggacagaaatttgac
tggacacagatgaaggagctcaccagttctcctctggagcagcacctggtattcctggat
gacagagattatggcacacgcttcacttacgccttcctgcatatgctccacagaggaatc
ttacccggccatcattacagactcctg
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