Cynara cardunculus var. scolymus (artichoke): 112508703
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Entry
112508703 CDS
T05604
Name
(RefSeq) SWI/SNF complex subunit SWI3B isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112508703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccav03021
]
112508703
03036 Chromosome and associated proteins [BR:
ccav03036
]
112508703
Transcription machinery [BR:
ccav03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
112508703
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
112508703
PBAF complex
112508703
GBAF(ncBAF) complex
112508703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
112508703
NCBI-ProteinID:
XP_024969179
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All DBs
Position
LG 3:798483..804464
Genome browser
AA seq
515 aa
AA seq
DB search
MATSSGGGATPLKPPAQPPKSIPELTPTSQNQKLQPLELSPNPITPPNLTSAPPIPTADS
KQPTTPATVNSRPREPDFDVIHVPSYSRWFSWNDIHECEVRILPEFFDGKSPSKTPKVYK
YYRNAIVKRFRDSIIENPPSKENPMPKITFTEARKSIIGDVGSVRKVFDFLEAWGLVNYF
GSPLTKAQLKWEDKESKNVSAASQQNSDNGGANSVGDASVPKKKFCSSCNSLCTIACFSN
IKKDTTFCARCYVRAGVNSADFKRVEISEEVKTDWTEKETLHLLEAVMHYGDDWKKVSEH
VVGRSEKECVDRFIKLPFGEQFTGPPDSIEPEENVHKAMDRFDIESNPSKKMRLTPFDDA
SNPILAQAAFLSTLAGVEVAETAASAAVKALTEVNIETSKEILESSAGDARDHDSVTTNG
KSNTNLLEGAYLEAKLQLEKEEQDLERTISDIAEVQAKNIHDKIVRFEELELQMEREWQQ
LRQMQNLLFADQLTLLFHKKDGNESMEQKVKTELS
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggctaccagctccggcggtggtgccacaccattgaagcccccagctcaacctcccaaa
tccatacccgaacttacccccacaagccaaaatcaaaagctccaaccgctcgaattatct
ccaaatcccatcactcctcccaacctcacctccgcccctcccattcccaccgccgattcc
aaacaacccaccactcccgcaaccgtcaattcgcggccgcgtgaacctgatttcgatgtc
atccatgttcctagttattccaggtggttttcttggaacgacatccatgaatgtgaggta
cgaattctcccagaattttttgatgggaagtcaccatctaaaaccccaaaggtttataaa
tactacaggaatgcaatagttaaaaggttcagagacagtatcatcgagaacccgccatct
aaagagaaccctatgccgaagattacattcaccgaggctcggaagtcaattattggtgac
gtggggtcagtacggaaggttttcgatttcttggaggcatggggtttggtcaattacttt
ggttcgcctttgacaaaggctcagttgaaatgggaagataaagagagtaagaatgtttct
gcagcttcacagcagaacagtgataacggaggagctaattcggttggtgatgccagtgtt
ccaaagaagaaattttgcagtagttgcaattctctttgcaccattgcttgcttttctaac
ataaagaaagacaccacattttgtgcacggtgctatgttcgtgctggagttaactctgca
gattttaagagagtggagatcagtgaagaggtaaagacagattggacagagaaagaaact
ttgcaccttctagaagccgttatgcattatggtgatgactggaagaaggtatctgagcat
gtcgttggtagaagtgaaaaagaatgtgtagatcgttttattaagcttccttttggagag
caatttactgggcctcctgattcaattgagcctgaggaaaacgttcataaagctatggat
cgatttgatattgaatccaatccgagcaaaaaaatgcgcctaacgccatttgatgatgca
agtaaccccatcttggctcaggctgcttttctttcaacattggcgggcgtagaggttgca
gaaacagctgcttctgcagctgtaaaggctttgacagaagtcaacatcgaaacaagtaaa
gaaattcttgaatcgtctgctggtgatgcaagagatcatgattctgtaaccacaaatggt
aagagcaacacgaatttgttggaaggagcttatcttgaggcaaagttgcagcttgagaag
gaagagcaggacttggagagaacaatttctgacattgctgaagttcaggccaagaatatc
catgataagattgttcgtttcgaggagcttgaactacaaatggagagagaatggcaacaa
ctacgacaaatgcagaatctgctgtttgccgatcagctaacgcttttgtttcacaagaaa
gacgggaatgaaagtatggaacagaaagttaaaaccgaattatcttga
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