KEGG   Cynara cardunculus var. scolymus (artichoke): 112515350Help
Entry
112515350         CDS       T05604                                 

Definition
(RefSeq) DNA ligase 6 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03030  DNA replication
ccav03410  Base excision repair
ccav03420  Nucleotide excision repair
ccav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112515350
   03410 Base excision repair
    112515350
   03420 Nucleotide excision repair
    112515350
   03430 Mismatch repair
    112515350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccav03032]
    112515350
   03400 DNA repair and recombination proteins [BR:ccav03400]
    112515350
Enzymes [BR:ccav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     112515350
    6.5.1.6  DNA ligase (ATP or NAD+)
     112515350
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     112515350
DNA replication proteins [BR:ccav03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    112515350
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     112515350
DNA repair and recombination proteins [BR:ccav03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     112515350
   NER (nucleotide excision repair)
    Other NER factors
     112515350
   MMR (mismatch excision repair)
    Other MMR factors
     112515350
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DRMBL RMMBL UBA_4 Lactamase_B_2
Motif
Other DBs
NCBI-GeneID: 112515350
NCBI-ProteinID: XP_024977881
LinkDB All DBs
Position
LG 7
AA seq 1449 aa AA seqDB search
MASSSSSQAKTLTLDSATLFLQSPQIVSPPLSFSLLSAGSSLPPMPTDFPLSKVIPKTNF
IVDGFRYSGDYSVSYFLSHFHSDHYCGLNANWSRGIIFCSSVTARLVVQVLKVSESFVVP
LPLSESVLVDGCEISLVDANHCPGAVQFLFKIPTGDGSCERYVHTGDFRYCSSMTSETGL
KEFIGADAIFLDTTYCNPKYVFPSQGESIDYVVSMIDKYRVENEGGLKSVLFLVATYVIG
KEKILLEISRRCNRKIHVDDRKFGILRTLGFGKDAVFTNKECETDVHVIGWNVLGETWPY
FRPNFAKMQEIKDAKGYSKVVGFVPTGWTYEVKRNKFAVRTKDSFEIHLVPYSEHSNYQE
LREYVKFLRPKRVIPTVGVDVENFDGKHVNKMLKHFAGLVDEMAIKQDFLMGFHRGSKEL
NEKVEKDSHNLNENVQGPEKDMAVAEQEARNDTSALHDQKEDRGSRDLVMITDKETDEII
QELRDCLPAWVTRDQMMDLISKSGKNIVEAVSNFYEHETEYHEQVITSTSSAPASLESSI
EILKEVIAHASSTCASNKTFSKDFTSPSSPVKFLLKSEESPSKRKISSNIKQSSKSSISP
NKKRKINDSKSSKKPRITSQLGSGGPKQCTITKFFNKLSPMASQDRSAGTLPERSHNDDK
LLPTTAVRHYKDEVDQFIQIINGSESLRSYATTILEETKGDINKALDVYYNNSKDKHSET
NKRAVQSSCFVEASTGICSYDQDTKVADRDKRDKSWSKQPTESLGTQPPAGNVASNLVSL
PPEKYSPTDHACWKDDQPAPYLHLARTFNLVEDEKGKIKATSMLCNMFRSLLILSPEDVL
PAVYLCTNKIAPDHENTELNIGGSIVTAALEEACGTNRSKIRDLYNSLGDLGDVAQLCRQ
TQKLLAPPAPLSIGGVYSVLREISVQTGSGSTMRRRNLIVNLMRSCREMEIKFIVRTLVR
NLRIGAMMRTVLPALAQAIVMNSGHERTMENLKERLQGLSAAVVEAYNILPNLDLLIPSV
MDNGIKFSPETLSMVPGIPIKPMLAKITNGIPQALKLFQGKALTCEFKYDGQRAQIHKLA
DGSIRVFSRNGDETTFRFPDLISIINELCNPDTVTFIIDAEVVAVDRKNGPKLLSFQELS
SRDRGGKNSFIAVDKIKARIYSITSILTKLFFEHRGAYLVDICVFAFDVMFANGEQLLGL
PLRQRRKYLNDLFGDEKKGYFEYSQQITVEVDDAYVTNEATMTKMNKFFDDAFHSSCEGI
MVKSLDVDAGYLPSKRSDSWLKVKRDYVEGLNDSLDLVPIGAWYGNGRKAGWYSPFLMAC
FDPDTDEYQSVCRVMSGFSDGFYVEMKDFFVDDKILPKNEKPSYYQTGEEPDMWFTPELV
WEIRGADFTVSPVHHAAIGLVHPSRGISVRFPRFIRSRSDKKPSGCSTAMDIAEMFHLQT
RKMDVRGGN
NT seq 4350 nt NT seq  +upstreamnt  +downstreamnt
atggcatcatcatcgtcatcccaagccaaaaccctaaccctagattctgcaaccttattt
ctacaatccccacaaatcgtttctcctcctctttctttctctctactatccgctggctcc
tctctccctccaatgcccacagatttccccctttctaaagttatccctaaaaccaatttt
attgttgacggtttccgatactccggtgactactccgtatcttacttcctctcccacttt
cactcggatcactactgtggacttaacgctaactggtctagaggaattatcttttgttca
tcggttactgctcgtcttgttgtccaagtgcttaaagtttcggaatcatttgtcgttcct
ttgccattgtcggagtcagttttggtcgacggttgtgagatttcgttggttgacgcaaat
cattgtccaggtgcagtccagttcttgttcaaaattccaaccggggacgggagttgcgag
aggtatgtgcataccggtgactttaggtattgtagttcgatgacatctgaaactggtttg
aaagaatttattggtgctgacgccattttcttggacactacctattgcaatccgaaatat
gtgtttccttcgcaaggggagtctattgattatgtagttagtatgattgacaagtatagg
gttgagaatgagggtggtttgaagtctgttttgtttcttgttgctacttatgttattggt
aaagagaaaatcttgcttgagatttcacgtagatgtaatagaaagatacatgttgatgac
agaaaatttggcattttgcgtactctggggtttgggaaagatgcggtatttactaataaa
gagtgtgaaactgacgttcatgttattgggtggaatgttttaggtgagacctggccatat
ttccgacctaattttgcaaagatgcaggagattaaggatgctaaggggtactctaaggtg
gtgggttttgtcccaacagggtggacctatgaagtaaagcggaacaagtttgctgtgagg
acaaaggattcatttgagatacatctggtaccttacagcgaacactcaaattatcaggag
cttagagagtatgtaaagtttttgagaccaaagcgtgttattccgacagtaggtgtggat
gttgagaactttgatgggaaacatgttaataagatgctgaagcattttgctgggttggtt
gatgaaatggccatcaagcaggacttcttgatggggtttcatcgtgggtccaaggaactg
aatgagaaggttgaaaaggattcacacaacctaaatgaaaatgtgcaggggccagaaaaa
gatatggctgttgctgaacaagaagctcgaaatgatacttctgcacttcatgatcaaaaa
gaggatcgtggctcacgggatttggtaatgataactgacaaggaaacggatgaaattata
caggaacttcgtgattgtttgcctgcttgggttactagagatcagatgatggatcttatc
agtaaatcaggaaaaaatattgttgaagcagtttctaatttttatgaacatgaaacagaa
tatcatgagcaggtcattactagtacatcttctgctcctgcatcattagaaagctcaatt
gagattctcaaggaggtcattgcccatgcttcatctacctgtgcatccaataaaaccttt
tctaaagacttcacatcaccttcatctccagttaaatttttattaaaaagcgaggagagt
ccaagtaaaagaaaaatatcatctaacatcaaacaatcaagtaagagcagcatttctcct
aacaaaaagaggaaaatcaatgacagtaagtcaagcaagaagcctagaatcacttcacaa
ctaggatctggtggaccaaagcaatgtacgataactaaattcttcaataagctttcccct
atggcgtctcaggatcggagtgcaggaactttgcctgaacgatcccacaatgatgacaag
ttgttgccaacaactgccgttaggcattacaaagatgaggtagatcagttcatacaaatc
ataaatggcagcgagtcattgcgtagctatgctacaaccatcttagaggagacaaaggga
gatatcaacaaggctctagacgtgtattacaacaactctaaggataaacacagtgaaact
aataagagggcagtgcagagtagctgttttgttgaagccagcactgggatctgctcttat
gatcaagacaccaaagtagcagacagggataaacgtgacaagtcctggtccaagcaacca
acagagtccttggggactcaacctccagctggaaatgtggcctccaaccttgtgtcctta
ccacctgagaagtattctcccacagaccatgcttgctggaaagatgaccagcctgctcct
tatttacatcttgccaggacattcaatctggtggaggacgaaaaaggaaagattaaagct
acatctatgctctgcaatatgtttaggagcttattaattttgtcgccagaggatgtgctg
ccagctgtttacttgtgcacaaacaaaattgctcctgaccatgaaaacacggaactgaat
attggtggaagcatagtcactgcagcattggaagaggcatgtgggacaaacagatcgaaa
attcgggatttatacaacagcttaggtgatcttggtgatgttgctcaactttgccgccag
acacaaaaactacttgcgccgccagctcccctctcaatcggaggtgtttattcggtgctt
cgagagatcagtgtacaaacaggtagtggaagtaccatgcggaggagaaacctcatcgtc
aatctgatgagatcttgtagagagatggagatcaagtttatagtcagaacattggttagg
aatttaagaattggggccatgatgagaactgttttgcctgcattagctcaggctattgtt
atgaactctggtcatgaaagaaccatggaaaatctgaaagaaaggcttcaggggctctct
gcagcagttgttgaagcatataacatactcccaaatttagatttgctcattccttctgtt
atggacaatgggattaaattttccccagaaacattgtcgatggttccagggataccgatt
aagccaatgcttgcgaaaattactaatggaatccctcaagcgttgaagctctttcaagga
aaagcacttacttgcgaatttaaatatgatggtcagcgtgcccaaattcacaaattagct
gatggatctatacgtgtgttttcgcgaaacggggacgaaacaacttttagatttcctgat
ctaataagtataataaatgagctttgcaatcctgatactgtgactttcataattgatgca
gaggtggtcgctgtcgatagaaaaaatggtcccaagcttctatcgttccaagaactatct
tctcgtgatagagggggcaaaaattcatttattgcagtagataagataaaggcccgaatc
tattccatcacaagtattctgacaaaattattctttgagcatcgtggtgcttatttagtt
gatatatgtgtcttcgcatttgatgtcatgttcgctaatggggaacagctgttgggttta
cctctgcggcaaagaagaaaatatttgaacgatttgtttggtgatgagaagaagggatat
tttgaatattcacagcaaataacagtggaggtggatgatgcttatgttaccaatgaagcc
acaatgactaagatgaataagttttttgatgatgcttttcattcctcatgtgaaggaatc
atggttaaatctcttgatgttgatgctggttatctcccgtcaaagcgttcggattcttgg
ttaaaggtcaagcgagattacgtggaaggtttaaatgattccctggacttggttcctatt
ggtgcttggtatggaaatggaaggaaggcaggatggtacagtccatttctcatggcgtgc
tttgatcctgacaccgatgaatatcaaagtgtttgccgtgtgatgtctggtttctctgat
ggtttctatgtagagatgaaagacttctttgtagatgacaagatcctaccaaaaaatgag
aaaccttcatattatcaaacgggcgaggagcctgatatgtggtttactccggaactagtc
tgggagatacggggtgcagactttacagtatcgccggtgcaccatgcagctatcggttta
gtgcatccttcacgtggcatttctgtgaggttcccgagattcattcgatcccggtcagat
aagaagccgagtggttgtagcactgccatggatatagcagaaatgtttcatctgcaaaca
cgaaagatggatgttcggggtggtaactga

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