Cynara cardunculus var. scolymus (artichoke): 112518835
Help
Entry
112518835 CDS
T05604
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082
ATP-dependent chromatin remodeling
ccav03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112518835
03083 Polycomb repressive complex
112518835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112518835
Enzymes [BR:
ccav01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112518835
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
112518835
HDAC complexes
Sin3A-HDAC complex
112518835
BRAF-HDAC complex
112518835
REST complex
112518835
SHIP complex
112518835
MiDAC complex
112518835
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112518835
Heterochromatin formation proteins
Other heterochromatin formation proteins
112518835
Chromatin remodeling factors
NuRD complex
112518835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112518835
NCBI-ProteinID:
XP_024982354
LinkDB
All DBs
Position
LG 10:24834604..24842550
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDKISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRINPDTQHLFPEEMAKFKLGEDCPVFDDLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGNMFFPGSGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IITKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELANEIPDNDYIKYFAPECSLRIPSGHIENFNSKSYLGTIK
MQVMENLRCIQHAPSVQMQEVPPDFYIPDFDEDERNPDERADQHTQDKQIQRDDEYYEGD
NDNDHNMEDV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcaaaagacaaaatttcctacttctacgatggggatgttggtaatgtttatttt
ggaccgaaccatccaatgaagccgcatcggttatgtatgactcatcatctggtgctttcg
tatgaacttcacaagaagatggaaatttataggcctcataaggcatatccagtggagcta
gctcagtttcactcggccgattatgtggagtttttgcagcggataaacccagatacccaa
catttgtttccagaggaaatggcaaagtttaaacttggagaagattgtcctgtctttgat
gatttgtttgagttttgccaaatatatgctggcggaacaattgatgctgcacgcagatta
aataatcagctttgcgacattgccataaattgggctgggggattacaccatgccaaaaag
tgcgaggcgtctggattttgttatatcaatgacttggttttgggcattttggagcttctc
aagtatcatgcacgtgttctgtatattgatatagatgttcatcatggtgatggtgtagaa
gaagccttttacttcactgacagggtaatgactgttagttttcacaagtacggaaatatg
ttctttcctggatctggtgatgttaaggaaattggtgaacgagaaggaaaattctatgcg
attaatgtccctttgaaggatggcatagacgacacgagttttactcgattgtttaaaacc
atcatcacgaaggttgttgaaacatatcaaccaggtgtgatagttctccagtgcggggca
gattcacttgctggggaccggctgggctgcttcaacctctctatagatggacatgcagaa
tgtgttaggattgtaaaaaaatttaatttgcctctgctggtaactggaggtggaggatat
accaaagagaatgttgctcggtgttggactgttgaaaccggagttcttttagacacggag
cttgctaatgagatcccagacaatgactatatcaagtattttgctccagagtgttcgtta
aggattccaagtggtcatattgaaaatttcaacagcaagtcctacctaggcaccataaag
atgcaagttatggaaaatctacgttgcatccaacatgccccaagcgtacaaatgcaagag
gttccacctgatttctatatccctgattttgatgaagacgagaggaaccctgatgaacga
gcagatcagcacacacaagacaagcaaattcaacgtgacgatgaatactacgaaggagac
aacgacaacgatcataacatggaggacgtttag
DBGET
integrated database retrieval system