KEGG   Cynara cardunculus var. scolymus (artichoke): 112518835
Entry
112518835         CDS       T05604                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ccav  Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03082  ATP-dependent chromatin remodeling
ccav03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ccav00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    112518835
   03083 Polycomb repressive complex
    112518835
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ccav03036]
    112518835
Enzymes [BR:ccav01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112518835
Chromosome and associated proteins [BR:ccav03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     112518835
   HDAC complexes
    Sin3A-HDAC complex
     112518835
    BRAF-HDAC complex
     112518835
    REST complex
     112518835
    SHIP complex
     112518835
    MiDAC complex
     112518835
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     112518835
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    112518835
  Chromatin remodeling factors
   NuRD complex
    112518835
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 112518835
NCBI-ProteinID: XP_024982354
LinkDB
Position
LG 10:24834604..24842550
AA seq 430 aa
MRSKDKISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYELHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRINPDTQHLFPEEMAKFKLGEDCPVFDDLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGNMFFPGSGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT
IITKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRIVKKFNLPLLVTGGGGY
TKENVARCWTVETGVLLDTELANEIPDNDYIKYFAPECSLRIPSGHIENFNSKSYLGTIK
MQVMENLRCIQHAPSVQMQEVPPDFYIPDFDEDERNPDERADQHTQDKQIQRDDEYYEGD
NDNDHNMEDV
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcggtcaaaagacaaaatttcctacttctacgatggggatgttggtaatgtttatttt
ggaccgaaccatccaatgaagccgcatcggttatgtatgactcatcatctggtgctttcg
tatgaacttcacaagaagatggaaatttataggcctcataaggcatatccagtggagcta
gctcagtttcactcggccgattatgtggagtttttgcagcggataaacccagatacccaa
catttgtttccagaggaaatggcaaagtttaaacttggagaagattgtcctgtctttgat
gatttgtttgagttttgccaaatatatgctggcggaacaattgatgctgcacgcagatta
aataatcagctttgcgacattgccataaattgggctgggggattacaccatgccaaaaag
tgcgaggcgtctggattttgttatatcaatgacttggttttgggcattttggagcttctc
aagtatcatgcacgtgttctgtatattgatatagatgttcatcatggtgatggtgtagaa
gaagccttttacttcactgacagggtaatgactgttagttttcacaagtacggaaatatg
ttctttcctggatctggtgatgttaaggaaattggtgaacgagaaggaaaattctatgcg
attaatgtccctttgaaggatggcatagacgacacgagttttactcgattgtttaaaacc
atcatcacgaaggttgttgaaacatatcaaccaggtgtgatagttctccagtgcggggca
gattcacttgctggggaccggctgggctgcttcaacctctctatagatggacatgcagaa
tgtgttaggattgtaaaaaaatttaatttgcctctgctggtaactggaggtggaggatat
accaaagagaatgttgctcggtgttggactgttgaaaccggagttcttttagacacggag
cttgctaatgagatcccagacaatgactatatcaagtattttgctccagagtgttcgtta
aggattccaagtggtcatattgaaaatttcaacagcaagtcctacctaggcaccataaag
atgcaagttatggaaaatctacgttgcatccaacatgccccaagcgtacaaatgcaagag
gttccacctgatttctatatccctgattttgatgaagacgagaggaaccctgatgaacga
gcagatcagcacacacaagacaagcaaattcaacgtgacgatgaatactacgaaggagac
aacgacaacgatcataacatggaggacgtttag

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