Cynara cardunculus var. scolymus (artichoke): 112520462
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Entry
112520462 CDS
T05604
Name
(RefSeq) RNA-dependent RNA polymerase 6-like
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ccav03036
]
112520462
Enzymes [BR:
ccav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
112520462
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
112520462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RdRP
SPARK
Motif
Other DBs
NCBI-GeneID:
112520462
NCBI-ProteinID:
XP_024984632
LinkDB
All DBs
Position
LG 10:complement(28472747..28483209)
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AA seq
1192 aa
AA seq
DB search
MEAERSDKDMEITQVSVGGFGDHVKAKMLLDYLEETVGRVWRCRVKASSTPPDTYPXFDA
BLENIQKVDDYEKVEPHAFVHFVDXDSVNSXLEIEGKGELVFLNNPLKVSLGPENPYRMN
QRRRTKXPFKXSNVVLEIGMFASRDNFLVGWRGPXSGVDFLIDPFDYSCKFLFTKDXAFS
FKGTKNHAVIKCNFKVEFLAREVNBIKDCLQSHXVLIFQLVSAPLISYRTADDDIAITHX
SEMLDDXDPWIRTTDFTPSGAIGRCHTYRVLIRXRDVXKAKKALAFXREQSVPIDQXRTK
XKVQNEPEFGIPLRXPFFCIQYEDDISFXVLFLVNACLHRGIINQHQFSEKVFDLLRDQS
XEVNVAALKHICSXRHPLYDGFTRLKIVQEWLLNNPMLIEKKIEQKDITEVRRLVITPSK
AYCLPPEVELSNRVLRHYRKVSDRFLRVTFMDEGMRTLNNHVLNFYPAXIVKGSIAQKTT
MFRRVXNILSEGFYLCGRXYRFLAFSANQLRDRSAWFFAENXKISCRXIXAWMGKFSNRN
VAKCAARMGQCFSSTYATVEVPRTEVDLBLXDIKRNGYVFSDGIGKMSPELALEVAEKLQ
LKDNQPCAYQIRYAGCKGVIVWWPGKKGDNIKLSLRPSMNKFESXHTVLEICSWTRLQPG
FLNRQIITLLSALNVGDDIFWEMQTKMVRNLBQMLEDTDMAFDVITTSCAEXGSXASIML
AAGFKPTTEPHLRXMLSSIRVAQLEDLREKSRIFVPEGRWLMGCLDELGVLEQGQCYIQV
SNPSVENCFVKHGSRFSETKRNLTVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLEHLFDC
LIFPQKGDRPHTDEASGSDLDGDLYFVTWDXNLIPPSKQSWPPMEYTAAEAKLLPRDVTQ
QDIIDFFTKNMVNDSLGTICNAHVVHADMSDDGALEKKCIKLAELAATAVDFPKTGKIVN
MPPALRPKLYPDFMGKESFQSYKSKKILGKLYRHVKDCRATDVTPSSELLILPSXIPYDE
DLEVREAASFVNDAWGCKLSYDRRLNGLLGQYKVAREEEIVTGHIWSMPKHASKKQGELK
ERIKHAYSALRKEFRKVFDYLGPDFDQIPEEERNERYERKASAWYQVTYHPIWVRKSLAL
QEPGREGETVNLSFAWIAADYLARIKIKRRGAGDGRSQKPIDSLGRYLADRM
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagagagaagcgataaggatatggaaatcacacaggttagtgtaggcggtttt
ggcgatcacgttaaggccaagatgcttttggattacttrgaagaaaccgtcgggcgagty
tggaggtgtcgagtaaaagcttcmtcaactcctccmgacacgtatcctgmatttgatgcc
racctcgagaacatacaaaaagtcgatgattaygagaaggttgaaccccatgcatttgtg
catttcgtggatyctgattcggtcaattcagytttagaaatcgaaggcaaaggtgagctt
gtatttctcaacaatcctttgaaggttagtttggggccggaaaatccgtatagaatgaac
caacgtagaaggacaaaagwaccctttaagttwtcaaatgtggttcttgagatyggratg
tttgctagccgggataatttccttgttggttggagagggcctgmttccggggttgacttt
cttattgacccgtttgattatagctgtaagtttcttttcactaaagatarygctttctct
tttaaggggacgaagaatcatgcagtgataaaatgcaattttaaggtygagtttttggcg
agagaagttaacracattaaagattgcttgcagtcrcatakggttttgatttttcagttg
gtatcggctcctcttattagctatagaacggctgatgatgatatcgctatcacacatycg
tcagaaatgttggatgatgwtgatccatggatccggaccacygattttacgccaagtggg
gctattgggagatgccatacttatcgcgttttgatccggaktcgagatgtacsgaaggca
aaaaaagctttagctttyyttagagaacaaagtgtccctatcgatcaattwagaacaaag
cytaaggtacagaatgaaccagaattcgggattccattgcgakatccstttttttgtatt
caatacgaagacgatatatcctttaragttttgttcttggttaacgcrtgtttgcacaga
ggcatcatcaaccagcaccaattctcggaaaaagttttcgatctgttgagagatcaatct
gwggaggttaatgtggctgccctgaagcatatatgttcayatcgtcaccctctatatgay
gggtttactcgattgaaaatcgttcaagaatggctactgaataatccaatgcttattgag
aaaaaaatagagcaaaaagacataaccgaagttcggagattggtcattacgccaagcaaa
gcctattgtctaccaccagaagttgagctatctaatcgtgttcttcggcattatcgaaaa
gtttctgacaggtttttacgagttacgtttatggatgaaggtatgaggactttaaacaac
catgttctcaacttttacccggctckcatcgttaaaggttctattgcacagaaaacaact
atgtttagaagggtgargaacattttgagtgaagggttttatttatgcggccgtcratac
cgtttcttggctttctcggcraaccaattgagggatcgatctgcttggttttttgctgaa
aacrrgaagatttcatgcagasatataamagcatggatggggaaattcagtaacaggaat
gtagctaaatgtgctgctagaatggggcagtgcttctcatcgacatatgcgactgtcgag
gtcccgagaaccgaggttgatttgraccttrargacatcaagaggaatggytaygtgttc
tcggatgggatcgggaaaatgtcaccggaacttgcacttgaagttgcygaaaagttgcag
ttgaaagacaatcagccgtgtgcgtatcagatcagatacgcgggttgtaagggagtcatc
gtgtggtggcctggaaaaaagggggacaatatcaagctttcattaaggccgagcatgaat
aarttygagtctgmtcatacggttcttgaaatatgttcttggacacggttrcagcccggt
ttcttgaatcgtcagataataacgctactctccgctttgaatgttggagacgatatcttt
tgggaaatgcagacgaaaatggtgagaaatctgraccaaatgctcgaggacacggatatg
gcatttgacgtgatcacaacatcgtgtgccgaaartgggagtwcagcttcgataatgttg
gctgccggtttcaagccgacaaccgaaccacaccttcgcgscatgttgagtagcatccga
gttgcacagctcgaagatttacgtgaraaatctcgaatctttgtkcccgaaggaaggtgg
ttgatgggttgtttggatgaattaggtgttcttgaacaaggccagtgctatattcaagta
tcaaacccgtcggtcgagaactgttttgtgaaacatgggtcgagattttctgaaacaaaa
cgaaatttgacagttatcaagggtactgtggtcattgcaaagaatccgtgtcttcatcct
ggtgatgttcgagttttagaggctgtagatgtccctggtctagaacatctgtttgattgt
ttgatttttccgcagaaaggagaccggccacacaccgatgaagcttccggaagtgatctc
gatggcgatctctatttcgttacatgggatraaaatcttataccacctagcaaacagagc
tggccgccgatggaatacactgctgccgaagccaaacttttaccacgcgatgttacccaa
caggacataatagattttttcaccaagaacatggttaaygacagtcttggaacgatttgc
aacgcacacgtagtccatgccgatatgagtgatgacggagctctagaaaaaaaatgcatc
aaactggcggaactagcggctaccgccgttgatttcccgaaaaccggcaagatcgtgaac
atgccgcctgctcttagaccgaagctttacccggatttcatgggmaaagaaagtttccaa
agctacaaatcgaagaaaatactcgggaaactttatcgccatgtcaaagattgtcgcgcc
acagatgtcacgccatcttccgaacttctaatcctcccttccmacataccgtatgacgaa
gatcttgaggttcgtgaggctgctagctttgtaaatgatgcttggggctgtaagttgtcg
tacgatcgacgactaaacgggcttctcggacagtataaggtggcccgagaagaagagatt
gtcacgggtcatatttggtcaatgccgaaacatgctagcaagaagcaaggtgaacttaaa
gaaaggatcaaacatgcgtacagtgcgttgaggaaggagttccggaaggtgttygactat
ctgggtcctgattttgaccagattccggaagaagaaagaaacgagaggtacgagcgaaag
gcgtctgcttggtaccaggttacgtaccatccgatttgggtaaggaaatcactggctttg
caagaacctggccgggagggcgaaacggtaaatttgagctttgcrtggatcgcagctgat
tatcttgcccgaatcaaaatcaagcgacggggagctggagacgggagatcccagaaaccg
attgattcacttggtcggtaccttgctgatcggatgtga
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