Cynara cardunculus var. scolymus (artichoke): 112523308
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Entry
112523308 CDS
T05604
Name
(RefSeq) protein transport protein Sec61 subunit alpha-like
KO
K10956
protein transport protein SEC61 subunit alpha
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03060
Protein export
ccav04141
Protein processing in endoplasmic reticulum
ccav04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
112523308
04141 Protein processing in endoplasmic reticulum
112523308
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112523308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ccav04131
]
112523308
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ccav02044
]
112523308
Membrane trafficking [BR:
ccav04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
SEC61 complex
112523308
Secretion system [BR:
ccav02044
]
Sec (secretion) system
Eukaryotic Sec-SRP protein
112523308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SecY
Plug_translocon
Motif
Other DBs
NCBI-GeneID:
112523308
NCBI-ProteinID:
XP_024988614
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Position
LG 12:30710040..30713494
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AA seq
475 aa
AA seq
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MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
LLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS
GISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ
NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL
VSNLYFISQLLHRKYSGNFLVNLLGKWKESEYSGQSVPVGGLAYYVTAPSSLADMAANPF
HALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPT
AAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKEKASELGLFGF
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtggttttcgagtgttacatctggtcaggccattcctttcatttttgccggaa
gtgcaaagtgcagataggaaggttcccttcagagagaaggtcatatacactgtgatctct
cttttcatctttctggtgtgcagtcagcttcctctgtatggcatacattcgaccactggt
gcagaccctttctactggatgcgtgttatcctggcgtcgaaccgtgggaccgtcatggaa
cttggtattacccccattgtgacttctggactagttatgcagttattagcagggtcaaaa
attattgaagtggacaataatgttcgtgaggatcgtgcactattgaatggtgcccagaag
ttgcttggcatcttgattgctgttggtgaggctgttgcctatgttctgtctggaatgtac
ggcagtgttggtcaacttggtgttggaaatgctattcttataattgttcagctatgtttt
gctgggatcattgtgatatgcctggatgaacttctccaaaagggatatggtctaggctct
ggaatttcattgttcatagctaccaacatctgtgaaagcattatctggaaagcattcagc
cctacaactatcaacagtgggcgcggtgctgagtttgagggtgcagttattgctttgttc
catcttctgatcactagatcggataaagttagagcactgcgggaagctttctatcggcag
aatctgcctaatgtgaccaatttgcttgctactgttttgatcttcctcattgttatctac
ttccaaggcttccgtgttgttttgcctgtgagatcwaagaaygctcgtgggcarcaaggs
tcwtaycccatyaagctrttctacacttccaacatgcccatcattcttcagtctgcactt
gtatccaacctttatttcatctctcagttgctgcacagaaagtacagcggaaatttcttg
gttaacttgttgggaaagtggaaggaatctgaatactcgggccaatctgttccagttggt
ggccttgcttactatgtgactgcaccttcaagtttggcagatatggcagccaatcctttc
catgctcttttctacttagtcttcatgttgacagcatgtgcactgttttcaaaaacatgg
atcgaggtttctggatcttctgcaagagacgtggccaagcaacttaaggagcaacaaatg
gtgatgcctgggcatcgggactcgaatctccagaaagaactgaaccggtacatcccaaca
gcggctgcgtttggaggaatgtgcattggtgctttgaccgttttggcggacttcatggga
gcgatagggtcgggtactgggatattgctagcagttacaatcatatatcagtactttgag
acatttgagaaggagaaggccagtgaactaggtttatttgggttttaa
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