Cynara cardunculus var. scolymus (artichoke): 112524502
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Entry
112524502 CDS
T05604
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112524502
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ccav01009
]
112524502
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccav03019
]
112524502
03036 Chromosome and associated proteins [BR:
ccav03036
]
112524502
Protein phosphatases and associated proteins [BR:
ccav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
112524502
Messenger RNA biogenesis [BR:
ccav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
112524502
Chromosome and associated proteins [BR:
ccav03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
112524502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
P2R3B_EF-hand
DUF4187
Motif
Other DBs
NCBI-GeneID:
112524502
NCBI-ProteinID:
XP_024990115
LinkDB
All DBs
Position
LG 13:8695896..8713844
Genome browser
AA seq
539 aa
AA seq
DB search
MDMDYNGDVGFLDPELLQLNEVSPLAIKSNPYVAEKLFEQWLSLPESTLLVKSLFNNAKA
GVPLNVSGSVSSPKASSSNSAPSMFPAGSAPPLSPRSSSGSPRITKQRAXPSVJGSPLKV
LSEPVKELIPXFYFQNGXPPPNELKERCLFRSNQFFYGHADGLQLHEFKPLTKEICKLPS
FFSTALFKKIDVDGTGIVTREAFVDYWVNGNMLIKDTATQIYTILKQPDLRYLTQEDFKP
ILRELLTTHPGLEFLQSTPEFQERYAETVIYRIFYYVNRAGDAHLTLRELKRGNLIAAMQ
HADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIF
SQVPRKFTSNVEGKMGYEDFVYFILSEEDKSSEPSLEYWFKCIDLDGNGVITKNEMQFFY
EEQLHRMECMAQEPVLFEDILCQIVDMIGPKDEGYFTLRDMKGSKLAGSVFNILFNLNKF
MAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDAEDASNGSADVWDESLEAPF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggatatggattataatggggatgtgggttttcttgaccctgaattgttacaactgaat
gaagtgtctcctttggctattaagtcaaatccttatgttgccgagaagctgttcgagcaa
tggctttcgcttcccgaaagcactcttttggtgaaatctttgtttaacaatgctaaagcg
ggtgttccattgaatgtctccggatcagtttccagcccaaaggcttcttccagcaattcr
gcaccttccatgtttcctgctggtagcgcgcctccactttcgccaagaagttcatctggt
tctccacgtatcacaaaacaaagggcagscccatctgttmtaggttctcctttaaaagtg
ytgagtgagccagtgaaagagttaatacctcakttttactttcagaatggtcrtccaccc
cctaatgaactaaaagaacgatgcttgtttagaagtaaccagtttttctatggtcatgcg
gatggactacaattgcatgaattcaagccacttacgaaggaaatttgcaaactgccatcg
ttcttctccactgcgctttttaaaaagatagatgttgacggcactggcattgtgaccagg
gaagcgtttgttgattactgggtcaatgggaatatgttaataaaagatactgccacccag
atatataccatattgaagcagcctgatttgagatatctaactcaggaggacttcaaaccc
atactccgtgaactattgacaactcatccaggtttggagttcttacagagcacacccgaa
tttcaggagcgatatgctgaaacagtaatatacagaattttttactacgtgaatagagcg
ggtgatgctcaccttaccctcagggagctgaaacgtggaaatttaattgctgcaatgcag
catgcagatgaagaagaggatataaacaaagttttaagatatttctcttatgagcacttc
tacgtaatttattgcaagttttgggagctggacacagatcatgattttttgattgataaa
gagaaccttatacgatatggtaatcatgcattgacatacagaattgttgacagaatattt
tcccaggtaccaagaaagttcaccagtaatgttgaagggaaaatgggatatgaagatttt
gtttatttcattttgtctgaagaggataaatcatcagagcctagtctggagtactggttc
aaatgcatagatttggatggaaacggtgttattacaaagaatgagatgcaattcttttat
gaggaacagttgcatcggatggaatgcatggcccaagaacctgttcttttcgaggacata
ttgtgtcagatcgttgacatgattgggccaaaggatgaggggtattttaccctacgtgac
atgaaaggaagcaaacttgctggcagtgttttcaatatcctttttaaccttaacaagttc
atggctttcgaaactcgtgatccttttctcattcgtcaggagcgtgagaatccaactttg
acagaatgggaccggtttgcacatcgggagtatattaggctctcaatggaggaagatgct
gaggatgcctccaatggtagcgcagatgtgtgggatgaatctcttgaggcccccttctga
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