Cynara cardunculus var. scolymus (artichoke): 112527214
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Entry
112527214 CDS
T05604
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
KO
K02977
ubiquitin-small subunit ribosomal protein S27Ae
Organism
ccav
Cynara cardunculus var. scolymus (artichoke)
Pathway
ccav03010
Ribosome
ccav04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ccav00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
112527214
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112527214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
ccav03011
]
112527214
04121 Ubiquitin system [BR:
ccav04121
]
112527214
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ccav04147
]
112527214
Ribosome [BR:
ccav03011
]
Ribosomal proteins
Eukaryotes
Small subunit
112527214
Archaea
112527214
Ubiquitin system [BR:
ccav04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
112527214
Exosome [BR:
ccav04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112527214
Exosomal proteins of colorectal cancer cells
112527214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_S27
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
Plexin_RBD
Dsc3_N
TBK1_ULD
OTU1_UBXL
Ubiquitin_5
DUF2604
Fer2_3
Motif
Other DBs
NCBI-GeneID:
112527214
NCBI-ProteinID:
XP_024993458
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All DBs
Position
LG 15:14317128..14317780
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AA seq
153 aa
AA seq
DB search
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLSVLQFYKVDDSGKVQRLRKE
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA
NT seq
462 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcttcgtgaaaacccttacgggtaagacgattacgttggaggttgaatcctcc
gayacgatcgacaatgtgaaggccaagatccaagacaaggaaggcatcccaccggaccaa
caacgtctcatttttgccggaaaacagcttgaggacggcagaacccttgctgactacaac
atccagaaggaatcgactctccacctggttctycgtcttcgtggtggcgcgaagaagcgc
aagaagaagacctacactaagccgaagaagatcaagcacaagcacaagaaggtgaagttg
agtgtgttgcagttctacaaagtcgatgattccgggaaggtgcagcggctgagaaaagag
tgtcctaatgctgagtgtggtgcggggactttcatggcgaatcatttcgataggcactat
tgcggcaagtgtggtctcacatatgtttaccagaaggcttaa
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