Corynebacterium casei: CCASEI_08865
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Entry
CCASEI_08865 CDS
T03041
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ccg
Corynebacterium casei
Pathway
ccg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CCASEI_08865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccg03019
]
CCASEI_08865
03009 Ribosome biogenesis [BR:
ccg03009
]
CCASEI_08865
Enzymes [BR:
ccg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CCASEI_08865
Messenger RNA biogenesis [BR:
ccg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CCASEI_08865
Ribosome biogenesis [BR:
ccg03009
]
Prokaryotic type
rRNA helicases
CCASEI_08865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHI20336
LinkDB
All DBs
Position
complement(1935945..1937984)
Genome browser
AA seq
679 aa
AA seq
DB search
MSITDNATGGAMEPEDNFNQSESQDKTQGDAVDTAQVTGAADTSEDTGAEDKNSANDNPQ
GFANLGLPDNVQDAVAKVGYTTPSPIQSETIPILMEGRDVVGLAQTGTGKTAAFALPVLS
QIDINARHPQALVLAPTRELALQVADSFQSFADHLGRIEVLPIYGGQAYGIQLSGLRRGA
QIIVGTPGRVIDHLEKGSLDISQLRFLVLDEADEMLNMGFQEDVERILADTPEEKQVALF
SATMPNGIRRLSKQYLNNPAEVTVKSQQRTNDNIKQRFLLTAHRAKLDAFTRILEVTDYD
AMIVFCRTKHETEEVAEKLRDAGYNAAAINGDIAQNQRERTVDQLKDGRLDILVATDVAA
RGLDVDRITHVVNFDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNA
RLEEMELPTVDEVNAKRKENFASQITEVLGDGQMELFRGLVRKYSETNNVAMDDIAAALA
VKLQGGSEFLVKDMPAPKRDRRERDRFDRDDRGGRGRDRDRGGRGRDRFDRDDRGGRGER
RSDGDFQTYRLDVGKRQNVRPGAIVGAIANEGGLSAKDFGRITISVGHTLVDLPKKMDPS
VLDRLRDTRISGQLINIQKDTGRPPRDRDFDDRGGRGDRGGDRGGRGGRGGRDFRGGDRD
RGGRGDRGGDRGGRGRWRD
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgagcattaccgataacgccaccggcggcgcaatggagccggaagataatttcaaccag
tcggaatctcaggataaaacgcaaggtgacgcagtagatactgcacaggtcaccggggct
gcggatacttctgaggacaccggcgctgaggataagaactcagccaacgataatccccag
gggttcgccaatttgggccttcctgacaacgttcaggacgccgtagccaaggttggttac
acaaccccttcaccaattcagtccgaaaccatcccaattttgatggaaggccgcgacgtc
gtcggcctggcacaaactggtacaggtaagactgcagcattcgcgctgcctgtcttgtcc
caaatcgatatcaatgcccgccatccgcaggcattggtgctggctccaactcgtgagctc
gcgctgcaggtcgcagattcattccagtcatttgcagatcacttgggacgcattgaggtg
ctgccaatttacggtggacaggcatacggcattcagctgtctggcctgcgtcgtggcgca
cagatcatcgtgggtactccaggccgtgtcattgaccacctggaaaagggctcgctggat
atttcccagctgcgtttcctcgtcctggatgaagcagatgagatgttgaacatgggcttc
caggaagatgttgagcgaatccttgctgacactccggaagaaaagcaggtcgcactgttc
tcggcaaccatgccgaacggtattcgtcgcctgtccaagcagtatttgaacaatcctgct
gaggtcaccgtcaagtcgcagcagcgcacgaatgacaacattaagcagcgcttccttctg
accgcacaccgcgcaaagctggatgccttcacccgcatcttggaagtcacggactacgac
gcaatgatcgtattctgccgcaccaagcatgagactgaagaagttgcagaaaagcttcgc
gatgcaggttataacgctgccgccatcaatggcgacatcgcgcagaaccagcgtgagcgc
accgttgaccagctgaaggatggccgtttggacatcctggttgcaactgacgttgcagct
cgtggcttggacgttgaccgcatcactcacgtggtcaacttcgatatcccgaacgatact
gagtcttacgttcaccgcattggccgtaccggccgcgcgggtcgtaccggcgaggcaatc
ttgttcgttactcctcgtgagcgtcgcatgctgcgttccatcgagcgcgtaaccaacgcc
cgtctcgaagagatggaactgcctaccgttgatgaggtcaacgcaaagcgcaaggaaaac
ttcgcttctcagatcactgaagttcttggcgatggccagatggaactcttccgtggccta
gttcgcaagtactccgagaccaacaatgtagcgatggatgacattgctgcagcgcttgcg
gtcaagctgcagggcggctctgagttcctggtcaaggacatgcctgctcctaagcgtgac
cgtcgtgaacgtgaccgtttcgatcgtgatgatcgcggcggacgtggacgcgaccgtgac
cgcggtggccgtggccgtgaccgtttcgaccgcgacgatcgcggtggacgcggcgagcgt
cgttccgacggcgacttccagacctaccgtctggacgtgggcaagcgtcagaacgttcgc
ccaggtgccattgttggcgctatcgcgaacgagggcggcctgtccgctaaggacttcgga
cgcatcaccatttcggttggccacaccttggttgacttgccaaagaagatggatccttcc
gttctggatcgtctgcgcgacacccgcatctcgggtcagttgatcaatatccagaaggat
actggtcgaccacctcgcgaccgcgacttcgatgaccgtggtggtcgtggtgaccgcggc
ggtgaccgtggtggacgcggcggccgtggcggacgtgacttccgtggtggcgaccgtgac
cgtggtggtcgtggtgaccgcggcggcgatcgcggtggacgcggacgctggcgcgattaa
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