KEGG   Coprinopsis cinerea: CC1G_01985Help
Entry
CC1G_01985        CDS       T01275                                 

Definition
(RefSeq) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cci  Coprinopsis cinerea
Pathway
cci03030  DNA replication
cci03410  Base excision repair
cci03420  Nucleotide excision repair
cci03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cci00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CC1G_01985
   03410 Base excision repair
    CC1G_01985
   03420 Nucleotide excision repair
    CC1G_01985
   03430 Mismatch repair
    CC1G_01985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cci03032]
    CC1G_01985
   03400 DNA repair and recombination proteins [BR:cci03400]
    CC1G_01985
Enzymes [BR:cci01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CC1G_01985
    6.5.1.6  DNA ligase (ATP or NAD+)
     CC1G_01985
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     CC1G_01985
DNA replication proteins [BR:cci03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    CC1G_01985
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     CC1G_01985
DNA repair and recombination proteins [BR:cci03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     CC1G_01985
   NER (nucleotide excision repair)
    Other NER factors
     CC1G_01985
   MMR (mismatch excision repair)
    Other MMR factors
     CC1G_01985
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 6006789
NCBI-ProteinID: XP_001830349
UniProt: A8N672
LinkDB All DBs
Position
3
AA seq 833 aa AA seqDB search
MAKRATAGDHSTPKKKSKVDGSKQMRLDDFLSPTKAPSGSASNTSHTRTTRSPIKTPEII
NVDMFEDRPLKTSTKSTTLSALPAHPAETKSPSGSPAKVFQLRDSRPTVVDYAPLDNNPL
LYSPDDQPWTSADVPYSFLCHALATLSQTRSRIAIINTLVNTLVTVIARHPPSLLPALYL
LSNSLSPPYAALELGIGSSVLSKAIQHVSGLSAPALKRLYNTTGDVGDVAFAAKSKVRTL
VPHAPLTVKGVYESLLKIARCKGQGAAQQKGKIVEQLLVAGNGEEIRYLVRTLAQNLRVG
AVRTSILTALARAFALHPPQQSSSSTSLFHVSKSLRERAARVSGKKSSSEVSNQEEVKEI
FSRAETLVKEVYVQRPCYDDIASALLQHGLPQLAQSVPLTVGIPLHPALGSPNRSFDEIY
DRLGGAPFTAEFKYDGQRAQIHARRDEEGKTHVKLFSRHLEDMTTKYPDVVATIERMLLD
APATTSFILDSEIVAIDLTTGELKSFQELSNRPRKGAKLENIKVAVGVFAFDLMYYNQQS
LLLAPFRERRALLRSKFSPFNPDDKTLARFDFVDSCESTAGKAAVTEFWEKAVSSRCEGL
MIKVLDSMGDNDSSPPASRISRKSQLPATYEPDKRTSAWLKLKKDYIEGMGDSLDMVPIG
AWYGNGRKAGWWSPILLGLWDPSAGRVIAMCKCMSGFTDAFYKNLSESYSLNSDDCSDQS
RWDCELGGFRPDVYFKPKEVWEIRGADVTESPVSLAALGLIAGNRGLSLRFPRFIRLRPD
KSIEQASTPSFLAGIYSQQQGKPVVTGADDGDLVDRVSEEGSTYESEERSDGE
NT seq 2502 nt NT seq  +upstreamnt  +downstreamnt
atggctaaacgagcaacggctggcgatcattcgacgccgaaaaagaaatctaaagtcgat
ggcagcaagcaaatgcgactggatgacttcctttcgccaaccaaagcaccatcgggcagt
gcatctaatacctcgcacacgaggacgactcggtccccaatcaaaactcctgaaatcatc
aatgtcgatatgtttgaggacagacccctaaagacttccacgaaatcaaccaccctttcc
gccctcccggcccatccggctgagaccaagtcaccgtcagggtctccagcgaaggtcttc
caattacgcgactcaaggccgactgttgtggattacgcaccactggataacaatcctctg
ctgtactctcctgatgatcaaccatggacgtcagcggacgttccgtattctttcctatgc
catgcattggcgaccttatctcaaaccaggtcaagaattgcgattattaacactctggtc
aacacgctcgtcaccgtgattgctcgccaccccccctcgctactcccggcgctttaccta
ctctccaactccctttccccgccgtatgctgctctggaactggggataggcagttccgtg
ctgtcaaaggccatccaacacgtgtcggggctgtcggcaccagcgctgaaaaggctgtac
aacacgacaggcgatgtcggggacgttgccttcgcggctaaatccaaggtccgcactctc
gtgccccacgctcctctcacagtgaagggcgtctacgaatctctgttgaaaatagcaaga
tgcaagggacagggtgctgctcagcagaaagggaaaatcgttgaacagttactggtggct
ggaaatggagaagagatccgatacctcgtacggacactggcccagaacctccgagttggt
gcagtcagaacttcgatactgacagcattggccagagcgtttgctttacatccacctcag
caatcttcctcgtcaacttccctgtttcatgtctcaaagtctctacgagagcgggcagca
cgggtttctggaaagaagtcgtcgtcggaggtgtcgaatcaggaagaggtcaaggagatc
ttttcccgggctgaaaccctcgtcaaagaggtgtatgtccaacgtccctgctatgatgac
atcgcctccgcgctcctgcagcatgggcttcctcagttggcacaaagtgtgccgctgaca
gttgggatccctttacacccggccctcggctcaccgaatcgatcttttgacgagatctat
gatcgtctgggaggtgctcccttcactgcagaattcaaatatgatggtcagcgtgctcaa
atccatgcgagacgagacgaagagggtaaaacccatgttaagctcttctcccgccacctc
gaggacatgacgacaaagtatcccgacgttgtagcaacaattgaacgcatgttgcttgat
gcgcctgccaccacatcctttattctcgactcggagatcgtcgcaatcgaccttactaca
ggagagctcaagtccttccaagagctgtccaatcgtccacgcaagggcgccaaactcgag
aacatcaaagtcgctgtcggtgtcttcgcgttcgacctcatgtactataaccaacagtcc
ttactgctggcgcccttcagagaaagaagagcgctgttgaggagtaaattttccccattc
aatccagacgacaaaacgcttgctcgatttgattttgtcgacagttgtgaaagcacggct
ggcaaggcggcagtcactgagttctgggaaaaggctgtgtccagtcggtgtgaaggtctg
atgatcaaggtattggactccatgggtgataatgacagtagccccccagcttcccggatt
tctcggaagtcacagctcccagcgacctacgaacctgacaagcgcacatcagcctggctg
aaattgaagaaggactacatcgaagggatgggggacagtctcgacatggtgccaattggt
gcatggtatgggaacggccgtaaggccggatggtggagtccgattttacttggactttgg
gatccttcagcgggtagggtgatagccatgtgcaagtgcatgtccgggtttactgatgca
ttttataaaaatttatccgaatcctactctttgaattccgacgattgttctgatcaatcc
cgctgggattgtgagctgggtgggttccgtcctgatgtgtatttcaagccgaaggaagta
tgggaaattcgtggcgcagatgtcaccgagagtcccgtctccctcgcggcacttggcctc
atcgccggaaaccgaggactcagcttgcggttccctagatttatcaggcttcggccagat
aaatccattgaacaagctagcacacccagttttctggccggtatctacagtcagcagcaa
ggtaaaccagtggtaacaggcgctgatgacggggatcttgtagatcgtgtttcagaggaa
ggtagcacatacgagtcggaggagcgctcggacggcgaatga

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