Corynebacterium crudilactis: ccrud_10515
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Entry
ccrud_10515 CDS
T04829
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccjz
Corynebacterium crudilactis
Pathway
ccjz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccjz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ccrud_10515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccjz03019
]
ccrud_10515
03009 Ribosome biogenesis [BR:
ccjz03009
]
ccrud_10515
Enzymes [BR:
ccjz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ccrud_10515
Messenger RNA biogenesis [BR:
ccjz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ccrud_10515
Ribosome biogenesis [BR:
ccjz03009
]
Prokaryotic type
rRNA processing factors
ccrud_10515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ANE04594
UniProt:
A0A172QV67
LinkDB
All DBs
Position
complement(2257542..2260643)
Genome browser
AA seq
1033 aa
AA seq
DB search
MPNNKAAEVSPSAVLAAEFDRDSLKEKTRVHQLSKQLGMASKDVVVALDSIGLVKVAQSN
LSKEEVEKLLDALSQPVREVAPAAVPDVEPVEKIRRRVEKNVENEIHQIEEKVERELAAV
AQPNDFEVAALEEATAELLEDIISEITPAPAEAPAYTPIFVAPAVIPTENIQETDDEQAR
ERSARKRRGRRGTGRGRGVETETVAEAHEEASTSEVEEVNEPIGIKGSTRLEAQRRRRTE
MREENKKKRHVVSTQEFLERRESMERRMIVRERQRHDHPGIVTQVGVLEDDQLVEQFVTS
DAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRRIEQAL
KAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERKRLKEIL
GRVVPTQGGTIIRTAAEGVSEENISADVNRLHTLWEQVKDRAAKEKKSRGSKPVTMYEEP
DMLVKVIRDLFNEDFTTLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRAEFDGKDAFEA
FDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKGGGNLEETVTLNNIEA
AEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDRTRHQVSEVTSLGLVQ
MTRKRIGAGLLETFSTECEHCEGRGIMILEDPVDHIDERVEAKAEERSRRHSRDSSDSSK
KAAEHPMVVAMRDLVESDDHDLDQEFEELAASVIVLDDSDLDDVVEGVVNDNLDEPERVL
AESTVEPEEGPRRRARRRGLVNAADDIAAIAAAAVDIADEEDPDEPSGSSYVSDFEAAGI
SEFSVPLKSVKPSEEESVDYEQARAAFESSPRRRRKTRGNSRSDHAPKAEDFVSAPVVAE
EPVAEATERKTPRRNRPSEVSVGAPSSAPSTRNRRRAVRRQEVEAPEVVVEVAPELVSEQ
PEAPQVEIFEQSSEGRRKRRRAVRVTSEPIAEQKVASKSQAPAPKKAPQSGAAAGGTTNP
GRRRRATRRAPRS
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaataataaggcagcagaagtttctccctcagctgtattagctgcggaatttgac
cgggactcattgaaagagaaaacccgcgtccaccagctgtcaaagcagcttggtatggca
tccaaagatgttgttgtcgcgcttgatagcatcggcctggttaaggttgcgcagtctaac
ctgagcaaagaagaagtagaaaagcttctcgacgccctgtctcagccagtgcgcgaagtt
gcacctgctgccgtccccgacgttgaaccagtagaaaagattcgtcgccgtgtggaaaag
aatgtggaaaatgaaatccaccaaatcgaagaaaaggtagagcgcgaactcgcagctgtg
gcgcagcctaatgatttcgaagtcgctgcacttgaagaagctactgcagaacttctggaa
gatatcatctcagaaatcaccccagctccagcggaagctccggcatacactccaatcttt
gtggcacctgcggtgattcctacggaaaatattcaagaaaccgacgatgaacaagcccgc
gaacgctcggcgcgcaagcgccgtggtcgtcgcggcaccggacgcggacgtggagtcgaa
acggaaaccgtagcggaggcgcacgaggaggcgtcgacaagcgaggtagaagaggtaaac
gagccaatcggtattaaaggttccactcgtttggaggcgcaacgccgtcgccgtaccgaa
atgcgcgaagaaaacaagaagaagcgccatgtggtgagcactcaggaattcctggaacgc
cgcgaatccatggagcgtcgcatgattgtgcgtgagcgtcagcgtcatgatcacccagga
attgtcacccaagttggtgtgttggaagacgatcagttggtggagcagtttgtcacctct
gatgcgcagatgtctatggtgggcaatatttacttgggccgcgtgcaaaacgtgctgcca
agcatggaagctgcgtttattgatatcggaaaaggccgcaacggcgtgctttatgccggt
gaagtggactggaaggctgctggccttggcggacgtggacgtcgaattgaacaggctttg
aaagctggcgatcaagtcctcgtgcaggtctctaaagatcctttgggtcataagggtgcc
cgactgactactcagatttctttggctggtcgttatttggtgtacgttcctggcggtcgt
agcgcaggtatttcccggaagcttcctggaccagagcgcaagcgcctgaaggaaatcctg
ggacgcgttgttcctacacaaggtggcacgattattcgtaccgcagctgaaggcgtatcg
gaagaaaacatctcagctgatgtgaaccgtctgcataccctgtgggagcaggtcaaggac
cgtgccgcgaaggaaaagaagtctcgcggttctaagccagtcaccatgtatgaagaacca
gatatgctggtcaaggtcattcgtgacctgttcaacgaagatttcaccacgttgatcgtt
gatggcgaccgcgcctggaatactgtccgtgcgtatatccagtctgtggcaccagattta
gtctcccgcgtggagcactttgatcgcgcagagtttgatggcaaggatgcctttgaggca
tttgatctcaacactcagctggaagaagcgctgtcacgaaaggtgaacctgccatccggt
ggatccctgatcattgaccgcaccgaagccatgacagttattgacgtcaacactggtcga
tacaccggcaagggcggcggaaacctcgaagaaacagttaccctcaacaatattgaggct
gctgaagaaatcgtgcgacagatgcgtctgcgcgatttgggcggcatgattgtcgttgac
ttcattgatatggtgctgccagaaaaccaagaattggtgctgcgcaggctcaacgaagcc
ctagaaaacgatcgcactcgccaccaggtttctgaagttacctcacttggacttgtgcag
atgactcgcaagcgtatcggcgctggtctgttggagacgttctccacagagtgtgagcac
tgtgaaggccgcggaatcatgattctggaagatccagtggatcatattgatgagcgcgtg
gaagctaaggcagaagagcgtagccgtcgacatagccgagattcttcggatagctccaaa
aaggctgcggagcacccaatggttgttgccatgcgtgatcttgtcgaaagcgatgatcat
gatctggatcaagaatttgaggagctggctgcatcagtcatcgttcttgatgattctgat
cttgacgatgtcgttgagggcgtagtcaacgacaatctggatgagccagagcgtgtcttg
gctgaatccactgtggaaccagaagaaggaccacgcaggcgggctcgtcgacgtgggctg
gttaatgcagccgatgatattgcagcgattgctgctgctgcggtagatatcgctgatgaa
gaagatccagatgaaccttccggttcttcctacgtctcagactttgaagctgctgggata
tctgagttttcagtacctttgaagtctgttaaaccttctgaagaagaatctgttgactat
gaacaggctcgtgcagcatttgaatccagcccacgcaggcgcaggaagactcgtggcaat
tcacgttccgatcacgcaccaaaggcagaagattttgtatctgcaccagtagttgctgaa
gaaccggttgctgaagctactgaacggaagactccacgacggaaccgaccaagcgaagtc
agcgtgggtgcaccgtcttctgcgccatctacaaggaaccgccgacgtgcagttcgtagg
caagaagtggaagctcctgaagttgtagtcgaggtagctccagaactcgtttcagaacag
ccagaggcccctcaggtggaaatcttcgagcagtcgtctgaggggcgcagaaagcgtcgt
cgtgcggtacgcgtgacttcagagccgattgctgagcagaaggtggcgtcgaaaagccag
gcacctgcaccgaagaaggctccgcaaagtggggctgctgcaggtggcaccactaaccca
ggccggcgtcgacgggctacccgacgcgcgcctcgcagctaa
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