Acetivibrio clariflavus: Clocl_4117
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Entry
Clocl_4117 CDS
T01661
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ccl
Acetivibrio clariflavus
Pathway
ccl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Clocl_4117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccl03021
]
Clocl_4117
03019 Messenger RNA biogenesis [BR:
ccl03019
]
Clocl_4117
Transcription machinery [BR:
ccl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Clocl_4117
Messenger RNA biogenesis [BR:
ccl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Clocl_4117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEV70551
UniProt:
G8LTP1
LinkDB
All DBs
Position
complement(4754046..4755983)
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AA seq
645 aa
AA seq
DB search
MEDINLKDKTLEDLRYIAKMLGIKNLSKYKKSELIEEIYKSSKGMDDGQKSGEGQEAQTS
EAVKEPDKKEVKTKEKKSKGKDSKKETAAKEEAAEAKEVPEAKEVSDTNEAPVVLRKSKR
GRPKANKTAEVKSEPEAEKDIKEDSGINKDIEDSGEKKETISDKNDKKDRAAEKERVASK
EDTIKEESAKKEDNEEKEEVAKQDTTSESDAAVNDNAKEDKREEEQKLDAESKTAKEAIT
ENESNKLNKPANKSLEQKNESTPQINVLEKIESDDPVEGVLEVLPDGYGFLRSDNYLSGP
KDVYVSPSQIRRFNLKTGDKIKGKGRIPKEGEKFQALLYVQSVNGDPPEVAAKRVPFEYL
TPIYPDQRITLETSPRELSTRLIDLIAPIGKGQRGMIVSPPKAGKTVLLKKIANAITTNY
PEMELIVLLIDERPEEVTDMQRSIKGEVIYSTFDEVPEHHIKVAEMVLERAQRLVEQKKD
VVILLDSITRLARAYNLTIPPTGRTLSGGLDPGALHKPKRFFGAARNIENGGSLTIMATA
LIETGSRMDDVIFEEFKGTGNMELHLDRRLSEMRIFPAIDINRSGTRREELLLDQKELES
IWAVRKAMSNMGTAQVTEMIINRLMQTKSNAEFVASINVAFNNEK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggaagatattaatcttaaggataaaacgcttgaagatctacggtatatagcaaaaatg
ttgggtatcaagaatttatccaaatacaaaaaaagtgaacttatagaagaaatatataaa
agcagtaaaggaatggatgatgggcagaaatctggagaagggcaggaagctcaaacttca
gaagctgtgaaagagccagataaaaaggaagtaaagacaaaagaaaaaaaatcaaaaggt
aaagattcgaaaaaagaaacagctgccaaggaggaagctgcagaagcaaaagaagttcca
gaagcaaaagaagtctcggatacaaatgaagcacctgtcgtacttaggaaatctaaacgc
ggaagaccgaaagcaaataaaactgctgaggtaaaaagtgaacctgaagcagaaaaagat
attaaagaagatagtgggattaataaagatatagaggattctggagaaaaaaaagagacc
atatcagataaaaatgataaaaaagacagggcagcagaaaaagaaagagtggcatcaaag
gaagatacgataaaagaagaatctgcaaaaaaagaggataatgaagaaaaagaggaagta
gctaaacaggatactacttcagagtctgatgctgctgttaatgataatgcaaaagaggat
aagagagaagaagagcagaaacttgatgctgaatcaaaaacagctaaagaagcaattact
gaaaatgaaagtaataaacttaacaagcctgctaataagtcgctggaacagaaaaatgaa
agtactcctcagataaatgtacttgaaaaaattgaaagtgacgacccggtggagggagta
ctggaagtattaccggacggttatggctttttaagaagtgataattacctttcgggtcca
aaagatgtttatgtatcaccatcacagatcagaagatttaacctcaaaactggagataaa
ataaaaggaaaaggccgcatacctaaagagggtgaaaagttccaagccctgctttatgtt
caatctgtgaacggagatccgccggaagttgcggcaaagagggttccatttgaatacctg
acgcctatatatcctgatcagagaattactcttgaaacatcaccaagagaattatcaaca
aggctaattgacttaatagcgcctataggtaaaggacagcgcggaatgatagtgtcgcct
ccgaaggcaggtaagaccgtgcttttaaagaaaattgcaaatgcgataactacaaattat
cctgaaatggaactaattgttttgctgatagatgaaagacctgaagaagtaacagatatg
cagcgttctataaagggagaggttatatattctactttcgatgaagttcccgagcatcat
ataaaggtggccgaaatggttcttgaaagggcgcagagacttgttgagcaaaagaaggat
gttgtaatactgcttgatagtataacgaggcttgcaagggcttataaccttacaatacca
cctacaggaagaacattgtccggaggacttgaccccggtgctctccataagcctaaaaga
ttttttggtgctgcgagaaacattgaaaatgggggaagtcttacaataatggcaacagcg
ctcattgaaacaggaagcagaatggatgatgtaatattcgaagaatttaagggaacaggt
aatatggaactgcatttagacagaaggttgtctgaaatgaggatattccctgcaatagac
attaacagatcaggaactcgtagagaagaactgcttcttgatcaaaaagagcttgaaagt
atatgggctgttcgaaaagcaatgagtaatatgggaactgctcaagtaactgagatgatt
atcaacagattgatgcagaccaaatcaaatgctgagtttgttgcaagtattaatgttgca
ttcaataatgaaaaatag
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