Cronobacter condimenti: AFK62_01685
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Entry
AFK62_01685 CDS
T04060
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ccon
Cronobacter condimenti
Pathway
ccon03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ccon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AFK62_01685 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccon03021
]
AFK62_01685 (rpoB)
03400 DNA repair and recombination proteins [BR:
ccon03400
]
AFK62_01685 (rpoB)
Enzymes [BR:
ccon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AFK62_01685 (rpoB)
Transcription machinery [BR:
ccon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AFK62_01685 (rpoB)
DNA repair and recombination proteins [BR:
ccon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AFK62_01685 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ALB61297
UniProt:
K7ZYY6
LinkDB
All DBs
Position
354785..358813
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALDYTTEQILDLFFEKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKIYVEKGRRITARHIRQLEKDEIKLIEVPVEYIAGKVAAKD
YVDTSTGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYMSETVRVDPTTDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANTNLTEEGRFADDLVTCRSKGESSLFSADQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLNEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLIAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKRQEEVAK
LREFIQKAYDLGQDVRQKVDLNTFSDDEVLRLAENLRKGMPLATPVFDGAKEAEIKELLQ
LGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgttccctatctcctttctatccagcttgactcgttccagaaatttatcgag
caagatcctgaaggtcagtatggtctggaagcggcttttcgttccgtattcccgattcag
agctacagcggcaattcggaactgcaatacgtcagctaccgtcttggcgaaccagttttt
gatgtaaaagaatgtcagattcgtggcgtgacctattcggcaccgctgcgcgttaagctg
cgcctggtgatctacgagcgcgaagcgccggaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtaccttcgtcatcaacggt
actgagcgtgttatcgtttctcagctgcaccgcagcccgggtgtcttctttgacagcgac
aagggtaaaacccactcatctggtaaggtgctttataacgcacgcatcattccttaccgt
ggttcctggctggatttcgagttcgatccgaaagacaacctgtttgtccgtattgaccgt
cgtcgtaaactgccggcaactatcatcctgcgcgcgctggattacaccactgaacagatc
cttgacctgttcttcgaaaaagtggttttcgaaatccgcgacaataagctgcagatggag
ttgattccggaacgtctgcgtggcgagaccgcatcttttgatatcgaagccaacggtaaa
atttacgtagaaaaaggccgtcgtatcactgcgcgtcacattcgccagcttgaaaaagat
gagatcaaactcattgaagtaccggtggaatatattgccggtaaggttgcggcgaaagat
tatgtggatacctctactggtgagctgatttgcccggctaacatggagctgtccctggat
ctcctggcgaaactgagccagtctggccacaagcgcatcgagacgctgttcactaacgat
ctggatcatggcccgtacatgtctgagaccgttcgcgtcgacccaaccaccgatcgtttg
agcgcgctggttgaaatctatcgcatgatgcgtcctggcgagccgccgacacgtgaagcg
gcagaaagcctgtttgagaacctgttcttctctgaagatcgttacgatctttctgcggtt
ggccgcatgaagttcaaccgttctctgctgcgtgacgagattgaaggttccggtatcctg
agcaaagctgacatcatcgacgtgatgaaaaagctcatcgatatccgtaacggcaaaggc
gaagtggacgatatcgaccacctcggcaaccgtcgtatccgttccgtaggtgaaatggcg
gaaaaccagttccgtgttggtctggtgcgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccgcaggatatgatcaacgccaagccaatctcggcc
gcggtgaaagagttcttcggctcaagccagctctctcagtttatggatcagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctctgcacttggcccgggcggtctgacccgt
gaacgtgctggcttcgaagttcgagacgtacacccgacccactacggtcgcgtatgtcct
atcgaaacgccggaaggtccgaacatcggtcttattaactccctgtccgtttatgcacag
actaacgaatatggcttccttgagacgccgtaccgtaaagtcactgacggcgtggtcacc
gacgagatccattacctttctgctatcgaagaaggtaactacgttatcgctcaggcgaac
accaacctgaccgaagaaggccgcttcgccgacgatttggtcacctgccgcagcaaaggc
gaatccagccttttcagcgcagaccaggttgactatatggacgtatccacccagcaggtg
gtttccgtcggtgcgtccctgatcccgttccttgagcacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggta
ggtaccggtatggaacgtgctgttgccgttgactccggcgtaactgccgtagcaaaacgt
ggcggtaccgttcagtacgtggatgcctctcgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgactaaatacacccgttctaac
cagaacacctgcatcaaccagatgccttgcgtgtctctgaatgaaccggtagagcgcggc
gacgtgctggcagacggcccgtccaccgacctcggtgagctggcgcttggccagaacatg
cgcgtagcgtttatgccgtggaatggttacaacttcgaagactccatcctcgtgtccgag
cgtgtagttcaggaagaccgtttcacgacgattcacattcaggaactggcatgcgtgtcc
cgtgacaccaagctggggccggaagagattactgcagatatcccgaacgtgggtgaagca
gcgctctccaaactggatgaatccggtatcgtttatatcggcgcagaagtcaccggcggt
gacattctggttggtaaggtaacgccgaaaggtgaaacccagctgacgcctgaagaaaaa
ctgctgcgtgctatcttcggtgagaaagcgtctgacgttaaagattcttctctgcgtgtg
ccaaacggtgtttccggtactgttatcgacgttcaggtctttacccgcgatggcgtggaa
aaagacaaacgtgccctggaaatcgaagaaatgcagctcaagcaggccaagaaagacctg
tctgaagaactgcagatcctcgaggcaggcttgttcagccgtatccgtgctgtattgatc
gctggtggcgttgaagctgagaagctcgacaaactgccgcgtgaccgttggctggaactt
ggtctgaccgacgaagagaagcagaatcagctggagcagctggctgaacagtacgatgag
ctgaagcacgagtttgagaaaaaactcgaagcgaaacgccgcaaaattacccaaggcgac
gatctggcaccgggcgtgctgaaaatcgttaaagtgtatttggccgtgaaacgccagatc
cagccgggcgataagatggcaggccgtcacggtaacaaaggtgttatctctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggcacgccggtagacatcgtactgaacccg
ctgggcgtaccgtcgcgtatgaacatcggtcagatcctggaaactcacctgggtatggcg
gcgaaaggtatcggcgataagatcaatgccatgcttaagcgtcaggaagaagtcgcaaaa
ctgcgcgaattcatccagaaagcctatgaccttggccaggacgttcgtcagaaagtcgac
ctgaacaccttcagcgatgatgaagttctgcgtctggctgaaaacctgcgtaaaggtatg
ccgctcgccacgccagtcttcgacggcgcgaaagaagctgaaattaaagagctgctgcag
ctgggcgacctgccgacttccggtcagattaccctgttcgacggccgtacgggtgaacag
ttcgagcgtccggtaaccgtaggttacatgtatatgctgaaactgaaccacctggttgac
gacaagatgcacgctcgttccaccggttcttacagcctggttactcaacagccgctgggt
ggtaaggcgcagttcggtggccagcgcttcggtgagatggaagtatgggcgctggaagct
tacggcgcagcctacaccctgcaggaaatgctgaccgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaaccatcagatggaaccgggcatgccg
gaatcgttcaacgtactgttgaaagagattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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