Chondrus crispus (carragheen): CHC_T00002345001
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Entry
CHC_T00002345001 CDS
T02916
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
ccp
Chondrus crispus (carragheen)
Pathway
ccp03022
Basal transcription factors
ccp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ccp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CHC_T00002345001
09124 Replication and repair
03420 Nucleotide excision repair
CHC_T00002345001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ccp03021
]
CHC_T00002345001
03400 DNA repair and recombination proteins [BR:
ccp03400
]
CHC_T00002345001
Transcription machinery [BR:
ccp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
CHC_T00002345001
DNA repair and recombination proteins [BR:
ccp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
CHC_T00002345001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
17321063
NCBI-ProteinID:
XP_005713351
UniProt:
R7Q6W0
LinkDB
All DBs
AA seq
343 aa
AA seq
DB search
MRAPRGDFRVRAADDPPSLLVVILDVAALAWTDIAGDKATATLQSVIEQLLVFLNSFMLL
HESNRICVILASPDGAQLVFPELSEPGSRCSDIDLVAEDNALDAATAGSGFTLHAEQTPL
KLRDAVLAGVKEAFRAQEGEVASAPAPISTALATALCLHNRAKSIKSTRSSLSLGQGNGQ
ANNDSGTCNGRILMLIASEDAPEQYVPVMNCIFSAQRMGVPLDSCIHGDKDSTYLQQAAY
LTNGVCLRPNEFSTENPNVLIQILQTVFLTDRLNRDFLAMPTPRKVDFRASCMKTRQIIE
DGYTCSVCLSTFATTVAKGAAMCPICSARFAITSRVKRRPPRP
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgcaccacggggtgacttccgcgttcgtgcggcagatgatcctccgagtttattg
gttgttatactcgatgttgcagcacttgcgtggacggatattgcgggcgataaagccacg
gcaactcttcaatctgtgattgaacagctacttgtctttttgaattcattcatgctcctt
cacgaatcgaatcgcatttgcgtaatcctggcttcaccagatggggcccagctagtcttc
ccagagctttcagaacccggctcgcgatgctctgatatcgatttagtcgctgaggacaat
gcactggatgctgctactgctggaagtggcttcactttacacgcagaacaaacaccattg
aaattgcgagacgccgtactcgcaggtgtcaaagaggcgtttcgagcgcaggaaggggag
gtcgcaagtgctccagctccgattagcactgctctcgccacggccttgtgtttgcataac
cgtgcaaaaagcattaaatcgacacgctcctcattgagtctaggccagggcaacggccag
gcaaacaatgattccggaacatgtaatgggcgaatccttatgcttatcgcaagtgaagac
gccccagagcagtacgtgccggtcatgaattgcatattctccgcccagcgcatgggcgtc
cccttggattcatgtatacatggggataaagactcaacataccttcaacaggccgcgtac
ctgacgaacggtgtttgtctcaggcccaacgagtttagcaccgaaaacccaaatgtacta
attcagatcttgcagacggtctttctgactgatcgtctcaaccgcgattttctggcaatg
ccaactccgcgcaaggtcgatttccgtgcttcttgtatgaagacaaggcaaatcattgaa
gatggctacacttgctctgtttgtttatcgacgtttgcaactacggtagcaaagggtgcg
gccatgtgccctatatgcagtgctcgcttcgccatcacgtctagagtgaagaggagacct
cccagaccctga
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