Caulobacter vibrioides CB15: CC_1877
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Entry
CC_1877 CDS
T00049
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ccr
Caulobacter vibrioides CB15
Pathway
ccr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC_1877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccr03019
]
CC_1877
03009 Ribosome biogenesis [BR:
ccr03009
]
CC_1877
Enzymes [BR:
ccr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CC_1877
Messenger RNA biogenesis [BR:
ccr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CC_1877
Ribosome biogenesis [BR:
ccr03009
]
Prokaryotic type
rRNA processing factors
CC_1877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TGT
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AAK23852
UniProt:
Q9A749
Structure
PDB
LinkDB
All DBs
Position
2071504..2074200
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AA seq
898 aa
AA seq
DB search
MSKKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGD
RAVDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLA
GRYGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKR
DYEYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARD
FMRMLMPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAID
VNSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVL
KDALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAA
LRAVEAEALKGSGSVILKVSRSVGLYILNEKRDYLQRLLTTHGLFVSVVVDDSLHAGDQE
IERTELGERIAVAPPPFVEEDDDFDPNAYDDEEEEDDVILDDEDDTDREDTDDDDATTRK
SARDDERGDRKGRRGRRDRNRGRGRRDERDGETESEDEDVVAEGADEDRGEFGDDDEGGR
RRRRRGRRGGRRGGREDGDRPTDAFVWIRPRVPFGENVFTWHDPAALVGGGESRRQAPEP
RVDAATEAAPRPERAEREERPGRERGRRGRDRGRRQRDEAPVAEMTSVESATVEAAEPFE
APILAPPVIAGPPADVWVELPEVEEAPKKPKRSRARGKKATETSVEAIDTVTEVAAEAPA
PETAEPEAVEVAPPAPTVEAAPEPGPVVEAVEEAQPAEPDPNEITAPPEKPRRGWWRR
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaagatgctgatcgacgcagcacacgccgaagagacgcgtgtggtcgtcgtg
gacggtacccgggttgaagagttcgatttcgagagccaaacccgcaaacagcttcgtgga
aacatctatctcgccaaggtgacgcgcgttgagcccagcctccaggctgcgttcatcgag
tacggcggcaaccgtcacggtttcctggcgttcaacgagatccaccccgactactaccag
atcccggtcgccgaccgcgaagcgctgatgcgcgacgactccggtgacgacgaggacgac
accccgatctcgcgtcgcgcctccggcggcgacgacgaagacgacgtcaatggcggcgac
cgcgcggtcgacgatgatgacgatgacgtcgaagaagaactggcgcgccgcaagcgccgc
ctgatgcgcaagtacaagatccaggaagtgatccgccgccggcagatcatgctggttcag
gtggtcaaggaagagcgtggcaacaagggcgcggccctgaccacctatctgtcgctggcc
ggccgctacggcgtcctgatgcccaacaccgcccgtggcggcggcatcagccgcaagatc
acggcggtgactgaccgcaagcgcctgaagagcgtcgtccaaagcctggacgtgccgcaa
ggcatgggtctgattgtccgcacagccggcgccaagcgcaccaaggccgagatcaagcgc
gactatgagtacctgctgcgtctgtgggagaacatccgcgagaacacgctgcactcgatc
gcgccggcgctgatctacgaggaagaagacctcgtcaaacgcgccatccgcgacatgtac
gacaaggacctggacggcatctgggtcgagggcgacgccggctacaaggaagcgcgcgac
ttcatgcgcatgctaatgccgagccaggccaagaaggtcttcaactaccgcgacccgacc
ccgctgttcgtgaagaacaagatcgaggaccatctggcccagatctattcgccggtcgtt
ccgctgcgctcgggcggctatctggtgatcaaccagaccgaggccctggtcgccatcgac
gtcaactcgggtaaggccacgcgcgagcgcaacatcgaggccaccgcgctgaagaccaac
tgcgaagcggccgaggaagccgcccgtcagctgcgtctgcgcgacctggccggcctgatc
gtcatcgacttcatcgacatggatgaagccaagaacaaccgcacggtcgagaaggtcctg
aaggacgcgctcaaggacgaccgcgcgcgcatccagatgggcaagatctcgggctttggc
ctgatggagatcagccgtcagcgtcgccgcaccggcgtgctggaaggcaccacccatgtc
tgcgaacactgcgaaggcaccggccgtgtccgttcggtggaatccagcgccctggccgcc
ctgcgcgccgtcgaggccgaggccctgaagggctcgggcagcgtgatcctgaaggtctcg
cgctcggtcggcctctatatcctcaacgaaaagcgcgattatctgcagcgtctgctgacc
acgcacggcctgttcgtgtcggtcgtggtcgatgacagcctgcacgcgggcgaccaggag
atcgagcgcaccgagctgggcgaacgcatcgccgtggccccgccgcccttcgtcgaggaa
gacgacgacttcgatccgaacgcctacgacgacgaggaagaagaagacgacgtcattctc
gatgacgaggacgacaccgaccgcgaggacaccgacgacgacgatgcgacgacgcgcaag
tcggcgcgtgatgacgagcgcggcgaccgcaagggccgtcgcgggcgtcgcgaccgcaac
cgcggccgcgggcgtcgcgacgagcgggatggcgagaccgagtccgaggacgaggacgtc
gtggccgaaggcgcggacgaggatcgcggcgagtttggcgatgatgatgaaggcggtcgt
cgccgccgtcgccggggtcgtcgtggcggccgtcgtggcgggcgcgaggacggcgatcgt
ccgaccgacgccttcgtctggatccgtccgcgggtgcccttcggcgagaacgtcttcacc
tggcatgatccggctgcgctggtcggcggtggcgagtcgcgtcgtcaggcgcccgagccg
cgcgtcgatgccgctaccgaggccgcgccgcgtcccgagcgggccgagcgcgaagagcgc
cctggccgtgaacgtggccgtcggggtcgtgaccggggccgtcgccagcgcgacgaggcg
ccggtcgccgagatgacctcggtggaaagcgcgactgtcgaggctgcggagccgttcgag
gcccccatcctggcgccgccggtaatcgccgggccgccggccgacgtttgggtcgaactg
ccggaagtcgaggaagcgcccaagaagcccaagcgctcaagggcgcgcggcaagaaagcg
actgaaacgtccgtcgaagcgatcgacaccgtcaccgaagtcgcggcggaggctcccgcc
cccgagaccgctgaacccgaagccgtcgaggtcgctccgccggcccccacggtcgaggct
gcgcctgagccgggaccggtcgtcgaagccgtcgaggaggcccaaccggccgagccggat
ccgaacgagatcaccgcgccgcccgaaaagccccgtcggggctggtggcgccggtaa
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