KEGG   Caulobacter vibrioides NA1000: CCNA_00878
Entry
CCNA_00878        CDS       T00841                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ccs  Caulobacter vibrioides NA1000
Pathway
ccs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CCNA_00878
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccs03019]
    CCNA_00878
Enzymes [BR:ccs01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     CCNA_00878
Messenger RNA biogenesis [BR:ccs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CCNA_00878
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UTP25 Helicase_RecD AAA_22
Other DBs
NCBI-GeneID: 7329918
NCBI-ProteinID: YP_002516251
UniProt: A0A0H3C5T6
LinkDB
Position
955220..956650
AA seq 476 aa
MTQFSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPI
LQRLAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMK
ALAGGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKN
RQNLFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELF
ADTSFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALV
ATDIAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDI
QKATRQTIPSFDRRNDKQLAAAAAVADKLVPAEKYVDPRKADPRNNVPSELRRKRNRNGG
GGGGGRAEGAQKAQGRGPGQGKAGAKPGQKAGPGQNEFRGPKRQSATAEKRWSPID
NT seq 1431 nt   +upstreamnt  +downstreamnt
gtgactcaattttccgaccttggcctggccaagccgctgctgaaggcgcttgctgaaaag
ggctacaaggaaccgaccccgatccaggcccaggccattccggtggtgctgcaaggcaag
gacctgttgggcatcgcccagacgggcaccggcaagaccgccgccttcgccctgccgatc
ctgcaacgtctggccgaagaccgtaagcccgcgccgcgccgcggctgccgctgcctggtc
ctgtccccgacccgcgaactggcgacgcaaatcgccgagaacttcaaggcctacgccgtc
cacatgggcctgtcggtccacaccatctatggcggcgtgaagtacggcccgcagatgaag
gccctggccggcggcatcgacgttctggtcgccacgcccggccgcctgatggaccacatg
gccgagaagtcggccattgtctcgggcaccgagatcttcgtgctcgacgaagccgaccag
atgctggacctgggcttcgtggtgccgatccgcaagatcgccgcccagctgaccaagaac
cgccagaacctgttcttctcggccaccatgccgagcgaaatcggcaagctggccggtgag
ctgctgaacaacccggtgcaggtctcggtcgcgccgcaggccaccacggtcgagcgcatc
gaccagcgcgtgctgttcatcgaggcccagcgcaagcgtccgctgctggccgagctgttc
gccgacacgagcttctcgcgcaccatcgtcttcacccgcaccaagcgcggcgcggaccgg
gtggccaagtatctgaacgcggccggtatcgaagccgcctcgatccacggcgacaagacg
cagggtcagcgcgaacgcgcgctcgcggccttcaaggccggcgagatgcgggccctggtg
gccaccgacatcgccgcgcgcggcatcgacgtcaacgacgtcagccacgtgatcaactac
gagctgcccaacgtgccggaggcctatgtccaccggatcggccgcaccgcccgcaagggc
aaggacggcatcgccatcagcttctgcgccgatgacgagcgtaacctgctgaaggacatc
cagaaggccacccgccagacgatcccgtccttcgaccgtcgcaacgacaagcagctggcc
gccgccgccgccgtcgccgacaagctggtcccggccgagaagtatgtcgacccgcgcaag
gccgacccgcgcaacaacgtcccgtcggaactgcgccgcaagcgtaaccgcaacggcggc
ggcggcggcggcggtcgcgccgaaggcgctcagaaggcgcaaggtcgcggccccggacag
ggcaaggccggcgccaagccgggccagaaggccggtcccggccagaacgagttccgcggt
cccaagcgccagtcggccacggccgagaagcgctggtcgcctatcgactaa

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