KEGG   Cupriavidus sp. USMAHM13: BKK81_30045Help
Entry
BKK81_30045       CDS       T04762                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ccup  Cupriavidus sp. USMAHM13
Brite
KEGG Orthology (KO) [BR:ccup00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BKK81_30045 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccup03400]
    BKK81_30045 (ligD)
Enzymes [BR:ccup01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BKK81_30045 (ligD)
DNA repair and recombination proteins [BR:ccup03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BKK81_30045 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S DUF4303
Motif
Other DBs
NCBI-ProteinID: AOZ04101
LinkDB All DBs
Position
2:complement(2691364..2693925)
Genome map
AA seq 853 aa AA seqDB search
MQDALAPYRRRRDFRTTPEPRDEAAARPRRVAGRHGRALAFVVQKHAARRLHYDFRLELD
GTLKSWAVPKGPSLDPADKRMAVHVEDHPVDYAEFEGVIPPGQYGAGTVIVWDRGAWIPE
GDPRAAYRAGKLTFELRGEKLRGHWTLVRMHGNRQKDQDAWLLIKGRDEASVPITELDVV
EAMPDSVLSGAAGRAPRKGASARKSGKPKAAEDVPLPRGARAARLPLTLSPQLATLVETP
PADEQDWRYEIKFDGYRLLARIDGKGVRLFTREGNDWTSRLQAVARDVGALGLPDGWLDG
EIVVLGKHGETDFQALQNAFRTSSVDAIQYFVFDLPFYAGHDLRKVRLAQRRGLLRRLFE
RNTSPRLQFSEEFEAGPADMLDAACRMKLEGVIGKRADSHYVSARSKTWIKLKCTLRQEF
VIGGFTDPRGSRHGIGSLLLGVHASNGHLRYAGNVGTGFDERMLSTLRAKLDGLVTDTTP
FDAPPASLNVHWVRPKLVAEVSFGSWTRDGRVRHSVFHGLRSDKPASAVILEQPAEVPAG
PARPSHKHKHGHKPTAAGGRVAISHADRIVDQATGITKGELVRYYERVAPLMLPHLRDRP
VALVRAPDGVGGEQFFQRHGDTLRVDGIHVLDAGLWPGHPGLLEIVSAPALVAAAQLNAI
EFHTWNASKRSIGKPNRIVFDLDPGKGLSWAHMREGAAMVKALLDELGLVSFLKTSGGKG
LHVVVPVTPRAGWDEVKDFAHAVVMHIAQLIPQRFVAKRGAERRVGKIFIDYLRNGIGAT
TVAAFSVRARPGLGLSIPVGWDELESLESAAEWSVSNCGRRLEALASRDPWEAYARTRQS
ISRAAARLASAPG
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
ctgcaggatgcgctcgcgccgtaccggcgccgacgggacttccggaccacgccggagccg
cgcgacgaggctgcggcacgcccgcgccgcgtcgccggcaggcatggcagagcgcttgcc
ttcgtggtccagaaacatgccgcgcgccgcctgcattacgacttccgcctcgaactggac
ggcacgctcaagagctgggccgttcccaaggggcccagcctcgatccggccgacaagcgc
atggcggtgcacgtggaagaccatccggtggactatgccgagttcgaaggcgtgattccg
cccggccaatatggcgcgggcaccgtcatcgtatgggatcgtggcgcgtggatcccggag
ggcgacccgcgtgcggcctatcgtgccgggaagctgacgttcgagctgcgcggggagaag
ctgcgcggccattggacgctggtccgcatgcacggcaacaggcagaaggaccaggatgca
tggctgctgatcaagggccgcgacgaagcctccgtgccgatcacggaactcgatgtggtg
gaagccatgccagacagtgtcctctccggagcggcagggcgagcgccgcgcaagggcgca
tcagcgcggaagtcaggcaagccgaaggcagcagaggacgtgcccctgcctcgcggcgcc
agggcggctcggttgccgctgacgctgtcgccacaactggcaacgctggtcgagacgcca
cccgccgatgagcaggactggcgctatgagatcaagttcgatgggtatcggctgctggcg
cggatcgacggcaagggcgtccgcctgttcacgcgcgagggcaacgattggacttccagg
ctgcaagcggtggcgcgcgacgtcggggcgctcggcttgcccgatggctggttggatggc
gagatcgtggtgttgggcaagcatggagagaccgatttccaggcgttgcagaacgccttc
aggacttcgtccgtcgatgccatccagtacttcgtcttcgacctgcccttctacgccggc
cacgacttgcgcaaggtgcgcctggcgcagcgccgcgggcttctcaggcggctcttcgaa
cgcaatacttcgccgcgcctgcaattcagcgaggaattcgaggctggcccggctgacatg
ctggacgcggcgtgccgcatgaagctggaaggcgtcatcggcaaacgcgccgattcgcac
tacgtcagcgcgcgcagcaagacatggatcaagctgaaatgcacgctgcggcaggagttc
gtgattggaggcttcaccgaccccaggggcagccggcacggtattggttccttgctgctg
ggcgtgcatgccagcaacgggcacctgcgctatgccggcaatgtcggcacgggtttcgac
gagcgcatgctcagtactttgcgcgccaagctggatgggctggtcactgacacgacacca
ttcgacgcgccgccggcatcgctgaacgtgcattgggtgcgcccgaaactggtggccgaa
gtttcgttcggttcgtggacgcgtgatgggcgggtgcggcattcggtttttcatggcctg
cgcagtgacaagcccgcatctgccgtcattctcgaacagcctgccgaggtccccgccggg
ccagcacggccttcacacaagcataagcacgggcacaagccgactgccgcgggcgggagg
gtcgccatcagccacgcggatcgcatcgtcgaccaagccacgggaatcaccaaaggagaa
ctcgtgcgctactacgagcgcgtggcgccgctgatgctgccgcacctgcgtgaccgtccg
gtcgccctggtgcgcgctcccgacggcgtgggcggcgagcagttcttccagcgccatggc
gacacgctgcgggtcgacggtatccatgttctggatgccggcctgtggccgggacatccg
ggattgctggagatcgtctcggcaccggcgctggtggcggctgcacagctcaatgcgatc
gagttccacacctggaatgccagcaaacgcagtatcggcaagcccaaccgtatcgtcttc
gacctggatcccggcaagggcttgtcctgggcgcatatgcgcgagggcgcggcgatggtg
aaggcgctgctcgatgaacttggactcgtcagcttcctcaagaccagcggaggcaagggg
ctgcatgtcgtggtaccggtgacgccgagggcaggctgggacgaggtgaaggacttcgcc
cacgccgtggtcatgcatatcgcccagctcatcccgcagcgctttgtcgccaaacgcggc
gctgagcggcgcgtcgggaagatctttatcgactacctgcgcaacggtatcggggctacc
accgtcgcggccttctcggtgcgtgcgcgccctggtctgggcctgtcgatacctgtaggc
tgggacgaactggaatcgttggagagcgccgcggagtggagcgtttccaactgtgggcgc
cggctggaagcgctggcatctcgtgatccatgggaagcctatgcccggacgcgccaatcc
atttcgcgcgctgcggcccggctggcaagcgcgcctgggtga

DBGET integrated database retrieval system