Corvus cornix (hooded crow): 104685428
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Entry
104685428 CDS
T03546
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ccw
Corvus cornix (hooded crow)
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccw03041
]
104685428 (DDX1)
03016 Transfer RNA biogenesis [BR:
ccw03016
]
104685428 (DDX1)
Enzymes [BR:
ccw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104685428 (DDX1)
Spliceosome [BR:
ccw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
104685428 (DDX1)
Transfer RNA biogenesis [BR:
ccw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104685428 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
104685428
NCBI-ProteinID:
XP_010391600
LinkDB
All DBs
Position
3:102854824..102874716
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGGVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYIGLCKAPEGSVVKSQHAGSAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVATGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDVLAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctccctacagatatccaagcagaatccatcccactgatcctgggaggtggt
gatgtgcttatggctgctgaaactggaagtggaaaaactggtgctttcagcattccagtt
atccagattgtttatgaaacgctgaaagaccaaatggaaggcaagaaaggaaaagccaca
attaaaactggagggggagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaattggatcggatggtttgtgttgtcaaagcagagagataaaagaatggcat
ggatgcagagcaactagaggagtgactaaagggaagtactattatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactagatctgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgatacaattgggtgctatctagacacagaaaaa
gggcaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
catataaggaaccaggcactttttgcagcttgtgtactgaagaatgctgaattgaaattc
aattttggtgaagaagatttcaagtttccaccaaaagatggctatattggtctttgcaag
gctcctgagggtagtgttgtaaaatcacaacatgcaggaagcgcgcaagtggttcaagca
cagaaccttccaaatgctccaaaagcattgattgtagaaccttcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatatgttgataatcccaaattaagggaa
ctgctgattattggtggagttgctgcaagagatcaactctctgtactggaacaaggcgtg
gatattgttgttggaactcctggaaggctggatgacctggttgcaacggggaagattaat
ttatctcaagttagattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcatcaacaggatccacagtcagattcctcagataacctcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactgcattcttttgatgtgaaaaagctatctgaa
aagatcatgcattttcccacctgggttgatttgaaaggagaagattctgtccctgaaact
gtacaccatgtagttgtgcctgtaaatccaaaagctgataagctctgggaaaggcttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacctggcgctaac
actccagaaatgtggtctgaagctattaaaattctaaaaggagaatacactgttcgggca
atcaaagagcacaagatggaccaagccattattttctgcaggactaaaatagactgtgat
aatatggagcagtacttcatccaacagggcggaggtccggataggaagggacatcaattc
tcatgtgtctgtctgcatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatctgcacggatgttgctgctagaggaattgat
attcacggtgttccatatgttatcaatgtgacactccctgatgaaaaacagaactatgtt
caccgaattgggagagtaggcagagcagagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagccgtggaaaagggtgttacaac
acaagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtaccg
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatgttctggcacctacagtacaagagctggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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