Corvus cornix (hooded crow): 104686001
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Entry
104686001 CDS
T03546
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104686001 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104686001 (LIG4)
Enzymes [BR:
ccw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104686001 (LIG4)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104686001 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
104686001
NCBI-ProteinID:
XP_010392439
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All DBs
Position
1:complement(82744963..82749279)
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AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKCKSRPEKTKYFKDFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIKNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTLVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSVYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTIFHSICRVGSGCTMKELYDLGLKLAKYWKPYHRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGTGKYSKSELESRIAQCGGSVVQNPGPETYCVIAGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLK
EVFSRMKDSKAMPLHLIAELEERYWWNSCQLGIFRGSTVYVDCYAVVNEPKSKIPGNTLS
IRALELRFYGAKVVSQLKEGVSHVVIGEDHSRVEEMKALRRTFRKKFKIVSELWVTHSVE
EGVTKNESQYLF
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcgcagcctcctcccaaaaaaacggtggcctctcacgtgcct
tttgccgatctgtgttctacactggagcgaatacagaagtgtaaatctcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccatgatgcacttcataaa
aaagagaaagatgtcacagattccttttacccagctatgcgacttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaaactctatattgaa
ctgcttcatttaccaaaagatggaaaggatgctgcaaagcttttaaattacagaacacct
acaggctcacgtggagatgctggagattttgcaatgatcgcatactttgtgctgaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtaaatgaacacttagatgcaata
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttctattttccatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccgtctgtctcactt
agtgatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggttcattaacgccatttatt
cataatgtatttaagagcaatataaaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaaggaaacaaatttgacatcaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtactaagcaaaagatatgaaatattaagtagtgtgtttactctg
gtaaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtaaaagatcccatg
tctgtatacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctgtgtgctattgccgagacgccccctccaaatgaa
aaaccgaccattttccactccatttgtcgtgttggctctggctgtactatgaaagagttg
tatgatctgggcttgaaactggctaaatactggaagccctaccataggaaggatcctcct
ggtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aagataattggcatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgtcgagttttgtgttatgacaggaacgggaaaatactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtgcagaacccagggccg
gagacttactgtgtcattgcaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcacagctcaag
gaagtgttctcaagaatgaaagacagtaaggcaatgcctctgcacttgattgcagagcta
gaagaacgttactggtggaacagctgtcagctcggtatattcagaggaagcactgtttat
gtggactgttacgctgttgttaatgagcccaaaagcaaaatccctggaaatacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcagctcaaagagggt
gtctcccatgttgttataggagaagatcattcacgggtagaagagatgaaagcactcagg
agaacatttcggaaaaaatttaaaattgtatctgagctgtgggtaacacactcagtggag
gaaggagtcacaaagaatgaaagtcagtacttgttttaa
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