Corvus cornix (hooded crow): 104698046
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Entry
104698046 CDS
T03546
Symbol
SAMHD1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
ccw
Corvus cornix (hooded crow)
Pathway
ccw03250
Viral life cycle - HIV-1
ccw04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ccw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104698046 (SAMHD1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
104698046 (SAMHD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ccw03400
]
104698046 (SAMHD1)
DNA repair and recombination proteins [BR:
ccw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
104698046 (SAMHD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
PDEase_I
ODP
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
104698046
NCBI-ProteinID:
XP_039419354
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Position
20:707979..737042
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AA seq
609 aa
AA seq
DB search
MGSPAGVPAKRARCEGPRGPAAPGSDRSDPRLWDTERLCQHLSRCGVGDPSLLRRFRESG
ITGRMLLDLPACAPEVTRVCCPAERLEVLACLTQLRQQHLEVMKVFNDPIHGHIEMHPLL
VQIIDTPQFQRLRYIKQLGGTYFVFPGASHNRFEHSLGVGYLAGYLVRTLKERQPELDIT
QRDILCVEIAGLCHDLGHGPFSHMFDGRFIPLTRPDLKWKHETASVQMFEHLITSNKLEE
VMKSYGLVLEEDMLFIKEQIGGPIDETSCVTSWPYRGRPKEKSFLYEIVANKKNGIDVDK
WDYFARDCHHLGIPNNFDYKRLLIFTRVCEVKNQKHICTRDKEVGNLYEMFHTRYCLHRR
AYQHKTGNIIEIMITEAFQKADKFFEIRGSGGKVYHISTAMEDMEAYTKLTDCIYQEILH
SSHPELEEAREILHKVERRELYKFLGETRPESKKEIVKSNSLAESIANSKPEKDPPDVEL
KAENFIVDIINMDYGMKEQNPIDNVHFYCKADPSKAVSISKEQVSKFLPIIFMEQVVRVY
YKSQDPDVISAAKQYFIQWCMENDFTKPQDSDVVAPHLTPMKKTWNNLTDDEHTRASEPS
CRQRLPFDE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggggagcccggcgggcgttcccgccaagcgcgcgcggtgcgaggggccccgcggcccc
gccgcccccggcagcgaccgcagcgacccgcggctgtgggacacggagcggctctgccag
cacctctcccgctgcggcgtgggcgatcccagcctgctgcgccgcttccgagagagcggg
atcaccgggaggatgctgctggacctgccggcctgcgcccccgaggtcacccgtgtctgc
tgcccagctgagcgactggaagtgctggcgtgcctgacacagctgcgacagcagcacttg
gaggtgatgaaggtttttaacgatcctattcatgggcacattgaaatgcatcccctgctt
gttcagatcattgacacccctcaattccagcgcctccggtacatcaagcagctgggtggc
acgtactttgtttttccaggagcctctcacaaccgctttgaacactccctaggggttggc
taccttgcaggatatctggttcgtacactgaaggagagacaaccagaactggatataacc
cagcgagacatcctctgtgtagaaattgctgggctttgtcatgatttgggtcatgggcca
ttttcacacatgtttgatggaagatttattccactcactcgtccagatttgaagtggaag
catgaaactgcttctgttcaaatgtttgagcacttgatcacttccaataaactagaagaa
gtcatgaagtcgtatggtcttgtcctggaagaagatatgctcttcatcaaggaacaaata
ggagggcctatagatgaaacttcctgtgtgacatcatggccctaccgtggtcgaccaaag
gagaaaagtttcctctatgagatagtagctaacaaaaaaaatggcattgacgttgacaag
tgggattattttgcaagggactgccatcacctgggaatcccaaataattttgactataag
cgattgcttatcttcactcgggtctgtgaagtgaaaaaccagaagcacatctgtacccgt
gacaaggaagttggaaatttgtacgagatgttccatacccggtattgcctgcaccggaga
gcatatcagcataagactggcaacatcattgaaataatgattacagaagcctttcaaaaa
gcagacaaattttttgaaataagaggctctggagggaaagtgtatcacatttctacagca
atggaggacatggaagcctacactaaactaactgactgtatctaccaggaaattctgcac
tcaagtcatccagaactggaggaggcacgagaaattttgcataaagtagaacgacgtgaa
ttatacaagtttttaggagagactcgacctgaatcgaagaaggaaattgtaaagagtaat
agcctggcagaaagcattgctaattccaagccagagaaggaccctccagatgtggagcta
aaggctgagaatttcatagttgatattatcaacatggattatggaatgaaagaacagaat
ccaattgataacgttcatttctattgcaaggctgatccttccaaggcagtcagtatcagt
aaagaacaggtttcaaagtttttaccgataatatttatggagcaggttgtccgggtttat
tacaaaagtcaggatccagatgttatttcagctgcaaaacagtactttattcagtggtgt
atggagaatgatttcaccaaaccacaggatagtgatgttgttgcccctcatctaactcca
atgaagaaaacctggaataacctgacagatgatgaacacacaagagcctcagaacccagc
tgcagacaaaggcttccttttgatgagtaa
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