Corallococcus coralloides: COCOR_03734
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Entry
COCOR_03734 CDS
T01780
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ccx
Corallococcus coralloides
Pathway
ccx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCOR_03734 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccx03019
]
COCOR_03734 (rnr)
03016 Transfer RNA biogenesis [BR:
ccx03016
]
COCOR_03734 (rnr)
Enzymes [BR:
ccx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
COCOR_03734 (rnr)
Messenger RNA biogenesis [BR:
ccx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COCOR_03734 (rnr)
Transfer RNA biogenesis [BR:
ccx03016
]
Prokaryotic type
tRNA degradation factors
COCOR_03734 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFE10182
UniProt:
H8MPS1
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All DBs
Position
4644956..4648204
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AA seq
1082 aa
AA seq
DB search
MSLSQDHIRQLLAEADHPLGVKELLRVAGLNPGQQTDLKRALRELVRAGAIVKDGKRFRL
EGPRVPRAPESGFESRRDASAPPFKKRGPAPGSGREERRGGFREDRPGFRGGGDFRRSLQ
RGSRDDRFEESGQPAVEGILHMHRDGFGFVHPVSGEGENIFLPPGEAQRALDNDRVLVEV
AGRPGRFEGRLVRVINRRRELAVGTYVAQGRHSLVMTTDSSLPGPIRVPPTQMARDGDLV
KVRLGVGADLLEPGQGLFGEVAGSLGRPGDPSAEVLGSAFAHGFNDEFPPEVMDEADAFA
VKVTEAEATEGNRRDLRKMPLITIDGEDARDFDDAVYAEPQAGGWRLVVAIADVSHYVKE
RSALDAEALNRATSVYLPDRVLPMLPERLSNGICSLRPDEDRLCMVADMTFDRHGQRRTH
ELYPAVMRSVARCTYNEVQDVLDGKDVPHRNFLKPQFEQLMALARALMGMRKARGAIDFD
VPEHKVVLGEDGVPQRMEKRERKDSHRLIEECMLAANEAVATYFQDEGLPTVYRFHGEPD
PQKLAAFAVLAEAYGFQLNVEDGVSSKELDAFITQLEGHPEQRALNQLLLRSMMQAVYTA
TRVGHYGLAAENYLHFTSPIRRYPDLLVHRVLKAVWARKGKKPSDAQLDREEERLEGMAQ
QCSERERAAMTVEREVVAFYAALMMKDRVGEEFDATVAGIAEFGFFVELDEVHVEGLVKG
ESLGPGSKLDKRTHSLVYPNGRRVRVGQKLRVRLLSANTTARKIDFEALQFEDEAPLQST
GGARPPPRRREYVNEAPGRHKGGRPGRSEREAAKTGRTPSRKPAGNADAEQWRSLAEAEE
TPFGVKKAWEPPTPEDAATVEAATVSGYGDEVLGEAPAASRPRGRFSREGRREEAAPARA
TSRFLRSRQEEAPAPKAEPAIPAKGKRKVIRPSLPATDEGSEPGTASRDDLAGADRPGDE
AVRDAKRSREAWDADRSGDAAPSRAKPSREAFTPPAFDSEDGAPAASPHPGFDRIRALAA
QRGQLPTGAAPGRAGASKKVRKAASGASAKAKPSKKSAPKKAGGSKGAGKKPGRGAPGKR
KR
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctctcccaagaccacatccgacagctgctcgccgaagccgaccaccccctgggc
gtgaaggagctccttcgtgtcgcggggctgaatcccggccagcagaccgacctcaagcgc
gccctgcgtgagctggtgcgcgcgggcgccatcgtcaaggacggcaagcgattccgcctg
gaaggcccccgcgtgccccgggcgcccgagtccggcttcgagtcccgccgggacgcgtcc
gcgccacccttcaagaagcggggccccgcgccgggcagcgggcgggaggagcgccggggc
ggcttccgcgaggaccgtccaggcttccgtggcggcggcgacttccggcgctcgctgcag
cgcggctcccgggacgaccgcttcgaagagtccgggcagcccgcggtggagggcatcctc
cacatgcaccgggacggcttcggcttcgtgcacccggtgtcgggcgagggggagaacatc
ttcctgccgcccggcgaggcgcagcgggcgctcgataacgaccgcgtcctcgtggaggtg
gcggggcggccgggccgcttcgagggccggctggtgcgggtcatcaaccggcggcgtgag
ctggcggtgggcacgtacgtggcgcagggccggcactcgctggtgatgaccacggactcg
agccttccgggccccatccgcgtgccgccgacgcagatggcgcgcgacggcgacctggtg
aaggtccggctgggcgtgggcgcggacctgctggagcccgggcaggggctgttcggcgag
gtggccggttcgctgggccggccgggcgacccgagcgcggaggtgctggggtccgcgttc
gcgcatggcttcaacgacgagttcccgccggaggtgatggacgaggcggacgcgttcgcg
gtgaaggtcacggaggcggaggccacggagggcaatcgccgcgacctgcgcaagatgccg
ctcatcaccatcgacggtgaggacgcgcgcgacttcgacgacgccgtgtacgcggagccc
caggccggaggttggcggctggtggtggccatcgcggacgtgtcgcactacgtgaaggag
cgcagcgcgctggacgcggaggcgctcaaccgcgccacgtcggtgtacctgccggaccgc
gtgctgcccatgctgccggagcgcctgtccaacggcatctgctcgctgcgcccggacgag
gaccggctgtgcatggtggcggacatgacgttcgaccgccacggccagcggcgcacgcac
gagctgtacccggcggtgatgcgcagcgtggcgcgctgcacgtacaacgaggtgcaggac
gtcctggacggcaaggacgtgccgcaccgcaacttcctcaagccccagttcgagcagttg
atggcgctggcgcgcgcgctgatgggcatgcgcaaggcgcgaggcgccatcgacttcgac
gtgccggagcacaaggtggtgctgggcgaggacggcgtgccgcagcgcatggagaagcgc
gagcgcaaggacagccaccggctcatcgaggagtgcatgctggccgccaacgaggcggtg
gccacgtacttccaggacgagggcctgcccacggtgtaccggttccacggcgagccggat
ccgcagaagctggcggcgttcgcggtgctggcggaggcgtacggcttccagctcaacgtg
gaggacggcgtttcgtccaaggagctggacgcgttcatcacgcagctggaggggcacccg
gagcagcgggcgctgaaccagctgttgctgcgctccatgatgcaggccgtgtacacggcg
acgcgcgtgggccactacggcctggcggcggagaactacctgcacttcacgtcgcccatc
cggcgctatcccgacctgctggtgcaccgcgtcctgaaggcggtgtgggcacgcaagggc
aagaagccctcggatgcgcagctggatcgcgaggaggagcggctggagggcatggcgcag
cagtgctcggagcgcgagcgcgcggccatgacggtggagcgcgaggtggtggcgttctac
gcggccctgatgatgaaggaccgcgtgggcgaggagttcgacgcgaccgtggcgggcatc
gccgagttcggcttcttcgtggagctggacgaggtccacgtcgagggcctggtgaagggc
gagtcgctggggccgggctccaagctggacaagcgcacgcactcgctcgtgtatccgaat
ggccggcgcgttcgcgtgggacagaagctgcgcgtgcggctgctgtccgcgaacacgacg
gcgcggaagatcgacttcgaggcgctccagttcgaggacgaggccccgctgcagagcacc
ggcggcgcacgtccgccaccgcgccgccgcgagtacgtgaacgaggcgccgggccgtcac
aagggtggcaggcccggacgcagcgagcgcgaggccgcgaagacgggccgcacgccgtcg
cgcaagcccgcggggaacgcggacgcggagcagtggcggtcgctcgcggaggcggaggag
acgccgttcggcgtgaagaaggcgtgggagccgcccacgcccgaggacgccgccaccgtg
gaggccgcgacggtctccgggtacggcgacgaggtcctgggagaagcgccggccgcgtcg
cgtcctcgaggacggttcagccgggaagggcgccgcgaggaggccgctcccgcccgcgcc
acctcccgcttcctgcgttcccgccaggaagaggcccccgcgccaaaggcggagcccgcc
atcccggccaagggcaagcgcaaggtcatccgtccctcgctccccgcgaccgatgagggc
agcgagcccggcacggcgtcccgcgacgaccttgccggcgcggaccgccccggtgacgag
gccgtgcgcgacgcgaagcgctcccgtgaggcctgggacgcggatcgctccggcgacgcg
gctccttcccgcgcgaagccctctcgcgaggccttcactccgcccgccttcgactccgag
gacggcgcgcctgctgcttcaccgcacccgggcttcgaccggatccgcgcgctggccgcg
cagcggggccagctccccacgggggcggctccgggccgcgcgggcgcgtccaagaaggtc
cgcaaggcggcctctggcgcgagcgcgaaggcgaagccctcgaagaagtccgcgccgaag
aaggccggcggctcgaagggcgcgggcaagaagccggggcggggcgctccgggcaagcgc
aagcgctga
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