Corallococcus coralloides: COCOR_04471
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Entry
COCOR_04471 CDS
T01780
Symbol
topI
Name
(GenBank) type I topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ccx
Corallococcus coralloides
Brite
KEGG Orthology (KO) [BR:
ccx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccx03032
]
COCOR_04471 (topI)
03400 DNA repair and recombination proteins [BR:
ccx03400
]
COCOR_04471 (topI)
Enzymes [BR:
ccx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
COCOR_04471 (topI)
DNA replication proteins [BR:
ccx03032
]
Prokaryotic type
DNA Topoisomerases
COCOR_04471 (topI)
DNA repair and recombination proteins [BR:
ccx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
COCOR_04471 (topI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AFE10524
UniProt:
H8MFF0
LinkDB
All DBs
Position
5673576..5674634
Genome browser
AA seq
352 aa
AA seq
DB search
MTQLERLRQDGHRRLGTMKRGFRYVDAQGRAVSQAERERIDALRLPPAWTDVAISPKASA
RLQAVGRDGAGRWQYRYSEAHTQKQRDAKYQRIVGFAQALPKMRRQVSKDLRKRGLGRER
VLAGMLRILGTCFIRPGSERYAEEHGSFGLATLRARHVKVHGDTVVFDYPGKSGVRQHRE
LKDRRVATLVRQLLKVPGRDVFKFVVDDGAVVDVRRRHINEYIQQVMGPGYSAKDFRTWA
GTLICACALARARERVKEDGDGGPVKKTVLKKSMVAAVREASEQLGNTPAVAKASYIYPS
VLVLFERGQVVDRYFKSVDELAASSGEGMHCSEKALLHMLGKTKLSAKQASV
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgacccagctggagcggctgcggcaggacggccaccggcggctggggacgatgaagcga
ggcttccgctacgtggacgctcagggccgggcggtgtcgcaagcggagcgggagcgcatc
gacgcgctgcgcctgccgcccgcctggacggacgtggccatctcgcccaaggcctccgcg
cgccttcaagcggtggggagggacggggcgggccgctggcagtaccgctacagcgaggcg
cacacgcagaagcagcgggatgcgaagtatcagcgcatcgtgggcttcgcgcaggcgctg
ccgaagatgcggcgccaggtgagcaaggatttgcgcaagcggggtctgggccgggagcgg
gtgctcgcggggatgctgcgcatcctgggcacctgcttcatccgccctggcagcgagcgc
tacgcggaggagcacggcagcttcgggctggccacgctgcgggcgcggcacgtgaaggtg
catggcgacacggtggtgttcgactacccgggcaagtccggtgtgcggcagcaccgcgag
ctgaaggaccggcgcgtggcgacgctcgtgcggcagttgttgaaggtgcccgggcgagat
gtcttcaagttcgtggtcgacgacggcgcggtggtggacgtgcggcgccggcacatcaac
gagtacatccagcaggtgatgggccccggctacagcgcgaaggacttccgcacctgggcg
ggcacgctcatctgcgcctgcgcgctggcgagggcccgagagcgcgtgaaggaggacggg
gacggcggtccggtgaagaagaccgtgctcaagaagagcatggtggccgcggtgcgcgag
gcctccgagcagctgggcaacacgcccgcggtggcgaaggcgtcgtacatctacccgtcc
gtgctcgtcctcttcgagcggggccaggtggtcgaccgctacttcaagtccgtggacgag
ctggcggcgagctcgggcgaaggcatgcactgctcggagaaggcgctgctgcacatgctg
ggcaagacgaagctcagcgcgaagcaggcgtccgtgtaa
DBGET
integrated database retrieval system
