KEGG   Corallococcus coralloides: COCOR_06602Help
Entry
COCOR_06602       CDS       T01780                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ccx  Corallococcus coralloides
Pathway
ccx03030  DNA replication
ccx03410  Base excision repair
ccx03420  Nucleotide excision repair
ccx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    COCOR_06602 (ligB)
   03410 Base excision repair
    COCOR_06602 (ligB)
   03420 Nucleotide excision repair
    COCOR_06602 (ligB)
   03430 Mismatch repair
    COCOR_06602 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ccx03032]
    COCOR_06602 (ligB)
   03400 DNA repair and recombination proteins [BR:ccx03400]
    COCOR_06602 (ligB)
Enzymes [BR:ccx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     COCOR_06602 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     COCOR_06602 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     COCOR_06602 (ligB)
DNA replication proteins [BR:ccx03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    COCOR_06602 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     COCOR_06602 (ligB)
DNA repair and recombination proteins [BR:ccx03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     COCOR_06602 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     COCOR_06602 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     COCOR_06602 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID: AFE09217
UniProt: H8MW57
LinkDB All DBs
Position
8302023..8303621
Genome map
AA seq 532 aa AA seqDB search
MRALADLYDTLDQTTSTNAKVEAMARYFRTAPPEDAAWGLFFLTGQKLKRLLTSKLLAGW
TMELTGVPDWLFDEVYASVGDLAEVIALLLDGANLPPEHAEELPLSRWLEERLLPLRGLD
AAEQRERVVGWWKSMPRRELFLLNKMLTGELRVGVSNTLVVRAIAQVTGLPPPSVAHRLM
GTWTPTKAFFEQLVAPDVSDGHVSRPYPYYLASPLEQPAESLGELSDWLVEWKWDGIRGQ
LIRRQGDVFLWSRGEELITERFPEITEAARALPEGTVLDGEVMAYEDGVPLPFARLQRRI
GRQKLTPKVLAEAPAAFVVYDLLEQDGKDLRELPLRERRARLEALLKDHPRFPISPTVTA
SSWEALAELRKESRARNVEGLMIKRLDSVYQTGRKRGDWWKWKIDPYTVDAVLLYAHPGH
GRRSSLYTDYTFAVWNGEDLLPVTKAYSGLTDEEIGKLDRWIRAHTREKFGPVRSVDPEQ
VFELHFEAIAPSPRHKSGIALRFPRIARWRADKTARDADTLDSLKGLLHAAH
NT seq 1599 nt NT seq  +upstreamnt  +downstreamnt
gtgcgagccctggccgacctctacgacacgctcgaccagacgacctccaccaacgcgaag
gtggaggcgatggcgcgctacttccggacggcgccgccggaggacgccgcctggggcctg
ttcttcctcacgggtcagaagctcaagcggctgctcacgtcgaagctcttggcgggctgg
acgatggagctgacgggcgtcccggactggctcttcgacgaggtctacgcgtcggtgggc
gacctggcggaggtgattgccctgctgctcgacggagcgaacctcccgcccgagcacgcc
gaggagctccccctctcgcgctggttggaagagcgcctgttgcccctgcgggggctggac
gcggcggagcagcgagagcgcgtggtgggctggtggaagtccatgccccgccgcgagctg
ttcctcctcaacaagatgctcacaggcgagctgcgcgtgggcgtgtccaacacgctggtg
gtgcgagccatcgcgcaggtcaccggcctgccaccgcccagcgtggcgcaccggctgatg
ggcacgtggacgccgacgaaggccttcttcgaacagctcgtggcgccggacgtatcggac
gggcacgtgtcgcgcccgtatccctactacctcgcgtcgccgctggagcagccggcggag
tcgctgggtgaattgagcgactggctcgtcgaatggaagtgggacggcatccggggccag
ctcatccggaggcagggcgacgtgttcctctggagccggggcgaggagctgatcaccgaa
cgcttccccgaaatcaccgaggccgcgcgggccctgcccgaaggcacggtgctcgacggc
gaggtgatggcctacgaggatggagtccccctgcccttcgcccggctccagcgccgcatt
ggcagacagaagctcacgcccaaggtgctcgcggaggcccccgccgcgttcgtcgtctac
gacctgctggagcaggacggaaaggacctgcgcgaactgcccctgcgcgagcgccgcgcg
aggctggaggccctgctcaaggaccacccgcgcttccccatctcccccacggtgacggcc
tcttcctgggaggcgctggcggagctgcgcaaggagtcccgcgcacgcaacgtcgaaggc
ctgatgatcaagcgcctggactcggtgtaccagacggggcgcaagcgcggcgattggtgg
aagtggaagatcgacccgtacaccgtggacgcggtgctgctctacgcgcatccaggccac
ggccggcgctcatcgctctacacggactacaccttcgcggtgtggaacggcgaggacctg
ctgccggtgacgaaggcgtactcgggcctcaccgatgaggagattggcaagctggaccgg
tggatccgcgcgcacacgcgggagaagttcggcccggtgcgctcggtggatccggagcag
gtgttcgagctgcacttcgaagccatcgccccgtccccgcgccacaagtcgggcatcgcc
ctgcgcttcccacgcatcgcccgttggcgcgcggacaagacggcgcgtgacgcggacacg
ctcgactcactgaaggggctgctgcatgcagcccactag

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