Campylobacter coli RM4661: YSS_06770
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Entry
YSS_06770 CDS
T03166
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ccy
Campylobacter coli RM4661
Pathway
ccy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ccy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YSS_06770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ccy03019
]
YSS_06770
03016 Transfer RNA biogenesis [BR:
ccy03016
]
YSS_06770
Enzymes [BR:
ccy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
YSS_06770
Messenger RNA biogenesis [BR:
ccy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
YSS_06770
Transfer RNA biogenesis [BR:
ccy03016
]
Prokaryotic type
tRNA degradation factors
YSS_06770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
S1_2
DUF2501
Mrpl_C
Motif
Other DBs
NCBI-ProteinID:
AHK77206
LinkDB
All DBs
Position
1272692..1274851
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AA seq
719 aa
AA seq
DB search
MQYSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLATVAREEKQVEEDFLPLTVQYIE
KAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGYAYPTQIVVMVLSADPQVD
LQVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNPNNEELKNSTLDLYVAGVKDE
LLMIEMRALPNQKEDEIFIEAPYADVLTQTTSQSMNELSEDEILEALSLAQKAILNGSNA
YEEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQIVQAINQMAKSERASELNKIAEKI
LKFESATKWDEESILNALAKVKHKIVRSQILNTKKRADGRNLNEVRPIAIETNILPNAHG
SCLFTRGQTQALVVATLGSENDAQMVDVLTEKNPINERFMVNYNFPGFSVGEASPIKAPG
RRELGHGNLAKRALYPSIDENYPYVIRLVSEILESNGSSSMATVCGGSLALRAAGVPSLK
LVAGVAMGLIFEGDQYAILTDIMGLEDHDGDMDFKVAGSKDGITALQMDIKLGGIDQKIL
KEALYQAKEGRIHILNIMEEALKEIVVNEEVLPKLELFNVDPSKIVDIIGQAGKTIKEII
EKFGVSIDLDREKGEVKIAGNENEQIKAAKDYIINITSSQKNNKKGFKEKDLSNFEIGEE
FEGKVKKITNFGAFIELKNGIDGLLHNSKSKNLNLSENQILKVKVSEIKNGKISVDLCE
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgcaatacagtatagaaatcaatggtaatttagaagtattcgatatagaaaaagtagct
aaacaagctgccggtgctgttttaatgagacaaggcaaaagcgttgttctagctacagtt
gcaagagaagaaaaacaagttgaagaagattttttacctctaaccgtccaatacatcgaa
aaagcttatgccgcaggaaaaatccctggtggttatgtcaaaagagaaaccaagccaagc
gatgcagaaaccttaacagcacgcattattgatagaagcttacgccctctttttccaaaa
ggatatgcctatccgacacaaattgtcgtaatggttctttctgctgatcctcaagtagat
cttcaagttatgagcttaaatgcagcaagcgtggcactttatcttagtgatattcctatg
aaagctcctgtttgtggagttcgcataggtcgcatagaagaaaaatttgtcctcaatcca
aacaatgaagaacttaaaaatagcacccttgatctttatgtagcaggggttaaagatgag
cttttaatgatagaaatgcgtgctttacctaatcaaaaagaagatgaaatctttatcgaa
gctccttatgcagatgttttaacccaaacaacttcacaaagcatgaatgaacttagcgaa
gatgaaattttagaagcgctaagtctagcccaaaaagctatattaaatggctctaatgct
tatgaagaagcttttttgaaacataaaaaatcaagcgatttaaatttcaaagatgaaata
gaaaatttcgaacttctcgcctttatagaaaataattttcacgatcaaatcgtacaggct
atcaatcaaatggcaaaaagtgaaagagcgagtgagttaaataaaattgctgaaaaaata
ttaaaatttgaaagcgcgacaaaatgggatgaagaaagtattttaaatgccctagcaaaa
gtcaaacataaaatcgttcgtagtcaaattttaaatacaaaaaaaagagcagatggtaga
aatttaaatgaagtgcgtcctattgccatagaaacaaatattttacctaatgcacatggc
tcttgcctttttacacgcggacaaactcaagctttggttgtggcgactttaggtagtgaa
aatgatgcacaaatggttgatgtgttaaccgaaaaaaatcctatcaatgaacgctttatg
gttaattataattttccaggtttttcagtaggcgaggcaagccctatcaaagcacctgga
agaagagagttaggacatggaaacttagccaaaagagccctttatccaagcatagatgaa
aattatccttatgttatccgtttggtaagtgaaattttagaaagcaatggctctagttct
atggcaacggtttgtggagggtctttagccttaagagcagcgggagtacctagcttaaaa
cttgtagcaggagtagctatggggcttatttttgaaggtgatcaatatgctattttaact
gatatcatgggtttagaagatcatgatggggatatggattttaaagtagcaggtagcaaa
gacggtatcacagccttacaaatggatatcaaattgggcggtattgatcaaaaaatactc
aaagaagccttgtatcaagctaaagaaggtagaattcatatcttaaatatcatggaagaa
gcgcttaaggaaattgttgttaatgaagaagtattaccaaaactcgagcttttcaatgtt
gatccttcaaaaatagtcgatatcataggtcaagctggaaaaactatcaaagaaattatt
gaaaaatttggtgtttctatagacttagatcgtgaaaagggtgaagtaaaaattgcgggc
aatgaaaacgaacaaattaaagccgcaaaagattatattatcaatatcacaagttctcaa
aaaaataataaaaaaggctttaaagaaaaagatctatcaaactttgaaatcggcgaagaa
tttgaaggaaaagtcaaaaaaatcacgaattttggagcctttatagaacttaaaaatgga
attgatggcttgcttcataattctaaaagtaaaaatctcaatttaagcgaaaatcaaatt
ttaaaagtaaaagtaagtgagattaaaaatggcaaaatctctgtggatttatgcgagtga
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