Clostridioides difficile R20291: CDR20291_2230
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Entry
CDR20291_2230 CDS
T00998
Symbol
abfD
Name
(GenBank) gamma-aminobutyrate metabolism dehydratase/isomerase
KO
K14534
4-hydroxybutyryl-CoA dehydratase / vinylacetyl-CoA-Delta-isomerase [EC:
4.2.1.120
5.3.3.3
]
Organism
cdl
Clostridioides difficile R20291
Pathway
cdl00650
Butanoate metabolism
cdl01100
Metabolic pathways
cdl01120
Microbial metabolism in diverse environments
cdl01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
cdl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
CDR20291_2230 (abfD)
Enzymes [BR:
cdl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.120 4-hydroxybutanoyl-CoA dehydratase
CDR20291_2230 (abfD)
5. Isomerases
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.3 vinylacetyl-CoA Delta-isomerase
CDR20291_2230 (abfD)
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Gene cluster
GFIT
Motif
Pfam:
HpaB_N
HpaB
TRCF
Motif
Other DBs
NCBI-ProteinID:
CBE05388
UniProt:
A0A9R0CF37
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All DBs
Position
complement(2618517..2620013)
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AA seq
498 aa
AA seq
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MALMTGAQYIESLRKLNTKVYMFGEEVKNWVDHPMIRPSINCVAATYDLAHDPEYADLMT
VTSNITGEKINRFGHLHQSVDDLIKKVKMQRLCGQKTASCFQRCVGMDAFNAVYSTTFEC
DKAHGTNYHDNFVKYLTYIQENDLVVDGAMTDPKGDRSLSPSAQPDPDMFLHIVERREDG
IIVRGAKAHQTGSINSHEHLIMPTISMTEADKDYAVSFAVPSDAEGVFMIYGRQSCDTRK
LEEGADVDLGNKEFGGQEALVVFDNVFVPNDRIFLCGEWDFSGMLVERFAGYHRQSYGGC
KVGVGDVIIGAAALAADYNGANKASHIKDKLIEMTHLNESLYCCGIACSSEGHKTEAGNY
QIDLLLANVCKQNVTRFPYEIVRLAEDIAGGLMVTMPSEKDFKSDLKVGTSGMTIGEVCN
KYFKASSVASTEERMRILRFLENICLGSSAVGYRTESMHGAGSPQAQRIMISRQGNINQK
KELAKKIAGIKKEEALNL
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcattaatgacaggagctcaatatattgaaagtttgagaaaattaaatactaaggtt
tatatgtttggtgaagaggttaagaattgggttgaccatcctatgattagaccatctata
aattgtgtagcagcaacttatgacttagctcatgacccagaatatgcagatttaatgaca
gttacttcaaatatcacaggtgaaaaaataaatagatttggtcatcttcatcaaagtgtt
gatgatttgataaaaaaagtaaaaatgcaaagactatgtggtcaaaaaacagcttcttgt
ttccaaagatgtgttggtatggatgcgtttaatgcagtgtattcaacaacatttgagtgt
gataaagcccatggaactaattatcatgataattttgtaaaatacttaacttatatacaa
gaaaacgatttagtagttgatggagctatgactgaccctaagggagatagaagtctatca
cctagtgctcaacctgacccagatatgttccttcatatagtagaaagaagagaagatggg
ataattgtaagaggagcaaaggcacatcaaactggttcaataaattcacatgagcacctt
ataatgcctactataagtatgactgaagcagataaagactacgctgtatcatttgcagtt
ccttcagatgctgaaggtgtgtttatgatttatggaagacaatcttgtgacaccagaaaa
ttagaagaaggtgcagatgttgatttaggaaataaggagtttggaggtcaagaagcttta
gtagtatttgataatgtatttgttccaaatgatagaattttcttatgtggagaatgggat
ttctctggtatgttagtagagagatttgcaggataccatagacaaagttatggtggatgt
aaagtaggagtaggtgatgtaataataggagcagcagctttagcagctgattataatgga
gcaaacaaagcttcacatataaaagataaactaatagaaatgactcaccttaatgaaagc
ttatattgctgtggtatagcatgttcatcagaaggtcacaaaacagaagctggaaactat
caaatagatttacttcttgcaaatgtgtgtaaacaaaatgtaactagatttccttatgaa
atagtaagacttgcagaagatatagctggagggcttatggttactatgccttcagaaaaa
gactttaaatcagaccttaaagttggaacaagtggaatgactattggcgaagtatgtaac
aagtattttaaagcttcttcagtggcttcaacagaagaaagaatgagaatattaagattc
ttagaaaatatatgtcttggttcatctgctgttggttatagaactgagtcaatgcatggg
gcaggttcaccacaagctcaaagaataatgatttcaagacaaggaaacataaatcaaaag
aaagaattagctaagaaaattgcgggaataaaaaaagaggaagctttaaatttataa
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