KEGG   Corynebacterium deserti: CDES_02630
Entry
CDES_02630        CDS       T04068                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
cdx  Corynebacterium deserti
Pathway
cdx03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cdx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CDES_02630 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cdx03021]
    CDES_02630 (rpoC)
   03400 DNA repair and recombination proteins [BR:cdx03400]
    CDES_02630 (rpoC)
Enzymes [BR:cdx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CDES_02630 (rpoC)
Transcription machinery [BR:cdx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CDES_02630 (rpoC)
DNA repair and recombination proteins [BR:cdx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CDES_02630 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ALC04981
UniProt: A0A0M5ITQ6
LinkDB
Position
538255..542256
AA seq 1333 aa
MLDVNVFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLDLIIYFGANIITSVDEEARHSDQTTLEAEMLLEKKDVEADAESEIAERAEKLEED
LAELEAAGAKADARRKVQAAADKEMQHIRERAQREIDRLDEVWQTFIKLAPKQMIRDEKL
YDELIDRYEDYFTGGMGAESIEALIRNFDLDAEAEELRDIINNGKGQKKMRALKRLKVVA
AFQRSGNDPAGMVLNAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIEL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLRLHECGLPKLMALELFKPFVMKRLVENEYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLYYLTLEKSPEEFGGQ
GAYQPANENGPEQGVYSSLAEAIMAYDRGVLGLQAPVRIRLDHLRPPADVEAAQFPGGWT
QGESWLAHTTLGRVLFNEILPWNYPYLEGVMVRKGGGSDKIMLGDVVNDLAAKYPMITVA
QTMDKMKDAGFYWATRSGVTIAMSDVLVLPNKEEMLDRYEESARQIEVKYNRGKLTSRER
YDRLVELWKDATDAVGQAVEDLYPDDNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSKGD
YITRPIKTSFREGLTVLEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVRVED
CGTRQGVRVPVAAEVLDATGAVTGYTRHDLIETSVSGRVLAGDATNAAGEVILAAGTDLT
ELNIDLLVGAGIKEVKVRSVLTCQTPTGVCAKCYGKSMASGHQVDIGEAVGIVAAQSIGE
PGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNCAPIASVDGTIHLEDEGNFYTLT
IVPDDGSDNVVYEKLSKRQGLASTRVAMESNAGAFIERTLTEGDHVTVGQRLLRGAADPH
DVLEVLGRRGVEQHLIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESGSTEFLPGS
LVDLSEAKLANSEAIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAIN
KRSDKLIGLKENVIIGKLIPAGTGIARYRNISIKPTEAARNAAYSIPTYGESIYGDDGFG
EFTGASVPLDEAF
NT seq 4002 nt   +upstreamnt  +downstreamnt
gtgctcgacgtaaacgtcttcgatgagctccgcatcggcctggccactgctgacgacatc
cgtcgttggtccaagggcgaggtcaagaagccggagaccatcaactaccgaaccctcaag
cctgagaaggacggtctgttctgcgagcgtatcttcggtccaactcgcgactgggagtgc
gcctgcggcaagtacaagcgtgtccgttacaagggcatcatctgtgagcgctgtggcgtt
gaggtcaccaagtccaaggtgcgccgtgagcgcatgggacacattgagctcgccgctcca
gtaacccacatctggtacttcaagggtgttccttcacgccttggctacctgttggacctt
gctccaaaggacctggacctcattatctacttcggtgcaaacatcatcaccagcgtggat
gaagaggctcgccacagcgaccagaccactcttgaggcagaaatgctcctggagaagaag
gacgttgaggcagacgcagagtctgagatcgcagagcgcgctgaaaagctcgaagaggat
ctcgctgagctcgaggcagctggcgctaaggccgatgctcgccgcaaggttcaggctgca
gccgataaggaaatgcagcacatccgtgagcgtgcacagcgcgaaatcgatcgcctggat
gaggtctggcagaccttcatcaagcttgctccaaagcagatgatccgtgacgagaagctc
tacgacgagctgatcgaccgctacgaggattacttcaccggcggcatgggtgcagagtcc
atcgaggctttgatccgcaacttcgacctcgacgctgaggctgaagagctgcgcgacatc
atcaacaacggcaagggccagaagaagatgcgcgccctgaagcgcctgaaggttgtcgca
gccttccagcgctccggtaacgatccagcaggcatggttctgaacgcgatcccagtgatc
ccaccagagcttcgcccaatggttcagcttgacggtggccgcttcgctacctctgacctg
aacgacctttaccgtcgtgtgatcaaccgcaacaaccgcctgaagcgcatgattgaactc
ggtgcacctgagatcatcgtgaacaacgaaaagcgcatgctgcaggaatccgttgacgcg
ctgttcgacaacggtcgtcgtggtcgcccagtgaccggtccaggtaaccgtccactgaag
tctctgtctgaccttctgaagggtaagcagggtcgtttccgccagaaccttctgggtaag
cgtgttgactactctggtcgttccgtaattatcgttggtcctcagctgcgcctccacgaa
tgtggtctgcctaagctgatggctctcgagctcttcaagcctttcgtcatgaagcgcctt
gtggagaacgagtacgcacagaacatcaagtctgcaaagcgcatggttgagcgtcagcgc
cctgaggtgtgggacgttcttgaagaggccatctctgagcacccagtgatgctgaaccgt
gcaccaaccctgcaccgcctcggcatccaggcgttcgagcctgtcctcgtcgagggtaag
gctattcagctgcacccactggcctgtgaagcattcaacgctgacttcgacggtgaccag
atggcagttcacctgccactgtccgctgaggctcaggctgaagctcgcatcctgatgctt
gcatccaacaacattctgtctcctgcgtctggtaagccactggctatgccacgtctggat
atggttaccggtctgtactacctgactctggagaagtctcctgaggagttcggtggacag
ggtgcttaccagccagcaaatgagaacggccctgagcagggtgtgtactcctccttggct
gaggcaatcatggcgtacgaccgcggcgtgcttggtctccaggcacccgtgcgtatccgc
cttgatcacctgcgcccaccagcagacgttgaagcagcacagttcccaggtggctggact
cagggtgaatcctggctcgcacacaccaccttgggtcgtgtcctgttcaacgagatcctg
ccttggaactacccataccttgagggcgtcatggtccgtaagggtggcggctccgacaag
atcatgcttggcgacgtggtcaacgacctcgctgctaagtacccaatgatcactgtggct
cagaccatggacaagatgaaggacgctggtttctactgggctacccgctccggtgtcacc
atcgctatgtctgacgttctggttcttccaaacaaggaagaaatgctggaccgctacgag
gaatctgcacgacagatcgaagttaagtacaaccgcggtaagctcaccagccgtgagcgt
tacgaccgactggtcgagctgtggaaggacgcaaccgacgctgttggtcaggctgttgag
gatctgtacccagatgacaacccaattccaatgatcgtgaagtccggtgctgccggtaac
atgcgtcagatttggacccttgcaggtatgaagggcatggttgtgaactcgaagggtgac
tacatcacccgtcctatcaagacttccttccgtgaaggcctgacagttctcgagtacttc
aacaactcccacggttcccgtaagggtctggccgataccgcactgcgtactgctgactct
ggctacctgacccgtcgtcttgttgacgtcgctcaggacgtcatcgtccgcgtcgaagac
tgtggcacccgccagggcgttcgcgttcctgttgctgctgaagttttggatgcaaccggt
gcagtcaccggctacacccgccatgacctgatcgagacttctgtttctggtcgtgttttg
gctggcgacgcaaccaacgctgctggtgaggttatcctcgctgctggcaccgacctgacc
gagctcaacattgatctcttggttggggctggcatcaaggaagttaaggttcgttccgta
cttacctgccagaccccaaccggtgtgtgtgcaaagtgctacggcaagtccatggcttcc
ggccaccaggttgatatcggagaggctgtcggcatcgtggctgcacagtccatcggtgag
cctggtacccagctgaccatgcgtaccttccaccagggtggtgtcggtggcgacatcacc
ggcggtctgcctcgtgttcaggagctgtttgaggcgcgtgttcctaagaactgtgcacca
atcgcttccgtcgacggcaccatccaccttgaggatgagggcaacttctacaccttgacc
atcgtccctgacgatggctcggacaacgttgtctacgagaagctgtccaagcgacagggt
ctcgcatccactcgcgtggcaatggaatcgaacgcaggtgccttcatcgagcgcactctg
accgagggtgaccacgtcaccgttggccagcgtctgctccgcggtgctgccgatcctcac
gatgttctcgaagttttgggtcgtcgtggtgtggaacagcacctcatcgatgaggtccag
gctgtttaccgtgcacagggtgtggccatccacgacaagcacatcgaaattatcattcga
cagatgcttcgtcgcggtaccgtcatcgaatccggttctaccgagttcctcccaggttct
ttggtggatctgtctgaggcaaagctcgctaactccgaggcaatcggtgctggcggacag
cctgcagagctccgctctgagatcatgggtatcaccaaggcatcgctggcaactgagtcg
tggctgtccgctgcatccttccaggagaccactcgtgtcctgactgatgctgcgatcaac
aagcgctccgacaaactcattggtctgaaggagaacgtgatcatcggtaagctgatccca
gctggtaccggtatcgcgcgctaccgcaacatctccatcaagccaaccgaggctgcacgc
aacgccgcatactcgattcctacctacggtgagtcgatctacggtgatgacggattcggt
gagttcaccggcgcatccgtcccattggatgaggctttctag

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