Cardinium endosymbiont of Sogatella furcifera: CE557_089
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Entry
CE557_089 CDS
T05597
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cec
Cardinium endosymbiont of Sogatella furcifera
Pathway
cec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CE557_089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cec03019
]
CE557_089
03400 DNA repair and recombination proteins [BR:
cec03400
]
CE557_089
Enzymes [BR:
cec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CE557_089
Messenger RNA biogenesis [BR:
cec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CE557_089
DNA repair and recombination proteins [BR:
cec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CE557_089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HemN_C
Motif
Other DBs
NCBI-ProteinID:
AXI23933
UniProt:
A0A345PMU9
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All DBs
Position
1:complement(122782..124749)
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AA seq
655 aa
AA seq
DB search
MCYTLHQLGSYPPTMDHIYDLLSNHWGYHSFRPLQESIIKGILDGKDLLVILPTGSGKSL
CFQLPALCKEGLTLVVTPLIALMKDQITQLAQRGIHAEAIFSGMSSVEIERRLDNCVYGN
VKLLYVSPERLQTDLFKLRAPTMSITTLVVDEAHCISQWGYDFRPSYLNIAQFKQMIPKA
NTVAFTATATKAVKQDIKDRLQLNHPLLFAQTFYRPNLVYWVRKTAHKEAQLLKALQHTS
GPAIIYVNTRKKTETIATFLHNNGITSAFYHAGLTMADRAMKQAIWSENKVRTMVATAAF
GMGIDKADVSLVVHLDLPTSLEAYCQEAGRAGRNNTIAYAILWYDLQDIAQLKQKWKESY
PTIDQVRKVYQHLVNYYKIAVGSHAFVSYDFDLADFKQTTGLYTKEAYYGLKALESEGFI
QLNEAYYQPSKIYIPLSREALYAFQLRHPAFDLCIKALLRLYGGTLFTPYCTVFEKKIAQ
LIQLTEYKVQEQLYALHRLKVLEYLPQKASPQITFLTSRYLASELPLPIHKIEQKNKIAY
QQIEAVIQYVTNNRRCRLATLLDYFDETEAICTQCDSCKEKANPTIDPNDRIAHRKYIMD
AIRQGNQDLKKLTASVPHEKEKALLDTIREMLDAKEIYYQTPGQLQISEIAKLLR
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgtgctatacattgcatcagctaggaagctatcccccaaccatggaccatatttatgac
ctattaagcaaccattggggatatcattcctttagaccccttcaggaatccatcattaag
ggtatattagatggtaaagatctattggttattttacctactggtagtggaaagtcactt
tgttttcaattaccagctttatgcaaagagggcttaacccttgtggttacaccccttatt
gcactgatgaaagaccaaatcacccaacttgcccagagaggcattcatgcagaggctatt
ttttcaggtatgtctagtgtagaaatagagcgtagactagataattgtgtatatggtaac
gtgaagttattatatgtatccccagaacgcttacagacagacctctttaagcttcgtgcc
cctaccatgtctattaccacgctagtagtagatgaggcccattgtatttcccaatgggga
tatgactttaggccctcctatttaaacattgcgcagtttaagcaaatgattccaaaggcc
aacactgtagcctttaccgctacagctactaaagcggttaaacaggatattaaagatcgt
ttacaactcaatcatccccttctttttgcacaaactttttatagacccaatctagtctat
tgggtgcgcaaaacagcgcacaaagaagcacagctgctgaaagctttacaacacacttct
ggaccggctattatctatgtaaacacacgcaaaaaaacagaaaccatcgctacttttctg
cataacaatgggatcaccagtgccttttaccatgccggtttaaccatggcggatagagca
atgaaacaagccatatggagtgaaaacaaagtacgtaccatggtggctacagcagcattt
ggtatgggcattgataaagcagatgtttccttagtagtacacttagacctacccacttca
ttagaagcctattgccaagaagcaggcagggcaggtcgcaataataccatagcctatgcc
attctttggtatgatttacaagatattgcacagttaaaacaaaaatggaaggagagttat
cccactattgaccaagtacgaaaagtctaccagcatctggttaattactataaaatagca
gtaggttcacatgcctttgtaagctatgattttgacttagcggattttaaacagacaacc
ggactctatacgaaagaagcctactatggattaaaagcattagagtcagagggttttata
caactcaatgaagcctattaccagccatctaaaatctatatacccctatctagggaagca
ttgtatgcctttcaattgcgtcatcctgcttttgatttatgcatcaaagcccttttaagg
ctctatggtggtacactttttacgccttattgtacagtttttgaaaaaaaaatagctcag
ttgattcaacttacagaatataaggtacaagagcaattatacgctttacatcggttaaag
gtattggaatacctccctcaaaaagcaagtccacaaattacttttttaacatcccgctat
cttgcttccgaattacctttaccaattcataaaattgaacaaaaaaataaaatagcttat
caacaaatagaagcggttatacaatatgttaccaataaccggcgctgccgtttggctact
ttgttggattacttcgatgaaacagaagcaatttgtacccaatgtgatagctgcaaagaa
aaggcaaacccaacgatagaccctaatgataggatcgcccatcgcaagtatattatggat
gccattaggcaaggcaaccaggacttaaaaaaacttactgcatcggtgcctcatgaaaaa
gaaaaagccctactggatacgattcgagagatgttagatgccaaagaaatatactatcaa
acccctggccaattacaaatcagtgaaattgcaaagctgctacggtaa
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