Dickeya fangzhongdai ND14b: LH89_16990
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Entry
LH89_16990 CDS
T03347
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ced
Dickeya fangzhongdai ND14b
Pathway
ced03030
DNA replication
ced03410
Base excision repair
ced03420
Nucleotide excision repair
ced03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LH89_16990 (ligA)
03410 Base excision repair
LH89_16990 (ligA)
03420 Nucleotide excision repair
LH89_16990 (ligA)
03430 Mismatch repair
LH89_16990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ced03032
]
LH89_16990 (ligA)
03400 DNA repair and recombination proteins [BR:
ced03400
]
LH89_16990 (ligA)
Enzymes [BR:
ced01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LH89_16990 (ligA)
DNA replication proteins [BR:
ced03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LH89_16990 (ligA)
DNA repair and recombination proteins [BR:
ced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LH89_16990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LH89_16990 (ligA)
MMR (mismatch excision repair)
DNA ligase
LH89_16990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LH89_16990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
5_3_exonuc
DZR_2
PUA_2
Motif
Other DBs
NCBI-ProteinID:
AIR70827
LinkDB
All DBs
Position
3829664..3831715
Genome browser
AA seq
683 aa
AA seq
DB search
MLEKESKPADDISTVSVQIDALRAQLRYHEYKYHVEDAPEIPDAEYDKLMNALKTLEQAH
PELVTSDSPTQRVGATPLDAFDTIAHEVPMLSLDNVFDETSFLAFSKRINDRLKNDGELA
FCCELKLDGLAVSLLYENGLLVRAATRGDGTTGENITANIRTVGAIPLRLRGDNIPERLE
VRGEVFMKHKGFEALNEEARRTGGKVFANPRNAAAGSLRQLDPRITATRPLTFLCYGVGL
VEGGTLPDTHWQRLMQFRDWGLPVSDRIRLCTGSDAVLDFYRQVEQERETLGFDIDGVVI
KVNELTLQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVA
GVVVSNATLHNADEIERLGIQIGDRVAVRRAGDVIPQIVSVVLSERPADARPVVFPEQCP
VCGSELERVDGEVVTRCTGGLFCGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVK
TPADLFRLSAGILTGLDRMGPKSAQNLVNALSKAKSTTFARFLYALGIRDVGEATAASLA
SHFGTLEALQSADLEALQQVQDVGIVVATHVRNFLDEAHNQQVIQDLISESIGIHWPAPV
VVDVEASDSPFAGKTVVLTGSLTLLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGS
KLTKAQELGIEVIDEAEMMRLLG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaaaagagtcgaagcctgccgacgatatctccaccgtgtcggtgcagattgac
gcgctgcgcgctcaactgcgctatcacgaatacaaatatcatgtcgaggatgcgccggaa
attcccgacgcggaatacgacaagctgatgaatgcgctgaaaacgctggagcaggcgcat
cctgaactggtgacgtcggattcgccgacccagcgggtcggcgccacgccgctggatgcg
tttgacaccatcgcgcatgaagtgccgatgctgtcgctggataacgtcttcgacgagacc
agttttctggcgttcagcaaacgtatcaacgaccgtctgaaaaatgatggcgagttggca
ttttgctgtgaactgaagctcgacggtctggcggtcagcctgctgtatgaaaacggtctg
ttggtgcgcgcggcgacacgcggcgatggcactaccggcgagaatattaccgccaatatt
cgtaccgtcggcgcgattccgttgcgtctgcgcggcgacaacatcccggaacggctggaa
gtgcgcggcgaagtgttcatgaaacacaagggattcgaagccctgaatgaggaagcgcgc
cgcaccggcggcaaggtgttcgccaacccgcgcaatgccgcagccggttcgctgcgtcaa
ctggacccgcgcatcaccgctacccgcccgttgacctttctgtgctatggcgttgggctg
gtggaaggcggaaccctgccggacacccactggcagcgactgatgcagttccgggactgg
gggctgccggtcagcgaccgcattcgcctgtgtaccggcagcgatgctgtactggatttc
taccgtcaggtggaacaggaacgcgagacgctggggttcgatatcgacggcgtggtgatt
aaggtcaatgagctgacgctgcaggaacggctggggtttgtcgctcgtgcaccgcgctgg
gcggtggcgttcaagttcccggcgcaggaacagttgacctggctgcgcgacgttgaattt
caggtcggccgcaccggcgcgattacgccggtggcgcggctggagccggtagccgtcgcc
ggggtggtggtcagcaacgccacgctgcacaatgccgatgaaatcgaacgtctggggatt
cagattggcgaccgggttgcagtaagacgcgccggcgatgtgatcccgcagattgtcagc
gtggtgctgtccgagcgcccggcggatgcccgcccggtggtgtttcctgagcagtgcccg
gtgtgcggttcagaattggagcgggtagacggcgaggtggtgacccgttgcaccggcggc
ctgttctgcggcgcgcagcgtaaagaagcgttgaagcacttcgtgtcccgtcgcgcgctg
gatgtggaagggatgggcgataagattatcgaccaactggtggagaaagagtacgtcaag
acgccggcggacctgtttcgcctgagcgccggtattcttaccggacttgaccgtatgggg
ccgaaatcggcgcagaatctggtgaatgcgctgagcaaagccaaatccaccacctttgct
cgttttctgtatgcgttggggatccgcgatgtcggagaggcgaccgccgccagcctggca
tcgcatttcggtacgctggaggcattgcagtccgccgatctggaggcgctgcagcaggtg
caggacgtcggcatcgtggtggcgacccatgtgcgcaattttcttgatgaagcgcacaac
caacaggtgattcaggacttgatcagcgagagtattggcattcactggccggccccggtc
gtggtggatgttgaggcttcggatagcccgttcgccgggaaaaccgtggtgttgaccggc
tcgctgacgctattatcccgtgacgaagccaaagatcgcctcacggcgttgggggcgaag
gtcagcggcagcgtgtcgaagaaaaccgatctggtgatcgcgggcgaagcggccggttcc
aagctgaccaaagcgcaggagctgggcattgaagtcattgatgaagcggaaatgatgcgc
ctgctggggtga
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