KEGG   Caenorhabditis elegans (nematode): CELE_F16D3.1Help
Entry
CELE_F16D3.1      CDS       T00019                                 

Gene name
tba-5
Definition
(RefSeq) Tubulin alpha chain
  KO
K07374  tubulin alpha
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel04145  Phagosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    CELE_F16D3.1 (tba-5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_F16D3.1 (tba-5)
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_F16D3.1 (tba-5)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cel04812]
    CELE_F16D3.1 (tba-5)
   04147 Exosome [BR:cel04147]
    CELE_F16D3.1 (tba-5)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CELE_F16D3.1 (tba-5)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     CELE_F16D3.1 (tba-5)
Cytoskeleton proteins [BR:cel04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    CELE_F16D3.1 (tba-5)
Exosome [BR:cel04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   CELE_F16D3.1 (tba-5)
  Exosomal proteins of other body fluids (saliva and urine)
   CELE_F16D3.1 (tba-5)
  Exosomal proteins of colorectal cancer cells
   CELE_F16D3.1 (tba-5)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Tubulin Tubulin_C Tubulin_3
Motif
Other DBs
NCBI-GeneID: 184569
NCBI-ProteinID: NP_492268
WormBase: WBGene00006531
Ensembl: WBGene00006531
UniProt: Q19490
LinkDB All DBs
Position
I:join(8353410..8353640,8355185..8355491,8355897..8356126,8356176..8356240,8356522..8356781,8357578..8357828)
Genome map
AA seq 447 aa AA seqDB search
MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQSYNTFFSETPSGK
HVPRAIFVDLEPTVIDEVRTGTYAKLFHPEQLISGKEDAANNYARGHYTIGKELIDVVMD
RVRRLTERCQSLQGFLIFHSFGGGTGSGFTSLVMERLSIDYGKKAKLEFSIYPAPQISTS
MVEPYNSLLTTHTTLEHSDCSFIMDNEAIYEITKVNLGVRSPTYTHLNRLLAQVVSSITA
SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVSEITNVCFEPGS
QMVKCDPRNGKYMACCLLYRGDVVPKEINSAISTIKTKRAIQFVDWCPTGFKVGINYQPP
TVVPGGDMAKLQRAVCMLSNTTAIQEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
AREDMAALEKDYEEVGVDSFDPNDEEY
NT seq 1344 nt NT seq  +upstreamnt  +downstreamnt
atgcgtgaaatagtttcgattcatatcggccaagccggtgttcaaatcggaaatgcctgt
tgggaactgtattgcttggaacacggaatcactccagacggtcttatgcctgatgataca
agctatggagttgaggatcaatcgtataataccttcttttcggagactccatctggaaaa
cacgtaccacgtgccatttttgttgacctcgaaccgactgtcatcgatgaggtacgcaca
ggaacttacgcaaagctcttccatccagagcaattaatcagtggaaaagaagatgcagca
aataattatgcacgtggacattatacaattggaaaagaactcattgatgttgtaatggat
cgtgttcgtcgtttgacagaaagatgtcagtcacttcaaggatttctcatttttcattca
ttcggtggtggaactggaagtggatttacttctcttgttatggagagattatcgattgat
tatggaaagaaggcaaagttggaatttagtatttatccagctcctcagatcagtacatca
atggtagagccatacaattcacttttgacaactcatacaacattggaacattcggattgt
tcatttataatggataatgaggcaatttatgagataacaaaagtgaatctaggtgtcaga
agtccaacatatactcatttaaatcgtcttttggcacaagttgtatcatcaattactgct
tcacttcgtttcgatggagcgttgaatgttgatttgacagagtttcagactaatttggtt
ccatatccccgtattcactttccacttgtcacatatgctccaatcatttcggcagaaaaa
gcatatcacgaacaactgtcggtgtctgaaatcacaaatgtgtgctttgaaccaggaagt
caaatggtgaagtgtgatccaagaaatggaaagtatatggcatgttgccttttgtatcgt
ggagatgttgtaccaaaagaaattaattctgcaatttcaacaatcaaaactaaaagagca
attcaatttgtggattggtgtccaactggttttaaagttggcatcaattatcaaccaccg
actgttgttccaggtggtgatatggcaaagcttcaacgtgccgtgtgcatgttgtcaaat
acaacagcaatacaagaagcatgggctcgtcttgatcataaatttgatttaatgtacgca
aaaagagcatttgttcattggtatgttggagaaggaatggaagaaggtgaattctctgaa
gcaagagaagatatggctgcattggaaaaagattatgaagaagttggagttgattcattc
gatccaaatgatgaagaatattag

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